Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01457 ATGGAGAAGAAAGAGGAGATAATACTTCCATTGCCATCCGAGACCCATCTCAAGGACCTTCCCAATGTTTCCTCCACCTCAAGGCCTGTTGGGTCCCACAAAGGGCACTGTTCTCCGGGTGATGACTCCGACAGCTTCTATGATAAACTCGTTGAGTTGTTGGAGTCTTCTGGACTCACTCTCATAAACAGTCACCACCTTACTAATTTAAAATTATTATCTGTTTTTGTCTCAATCGAGGTTGGTCGAGAAAGGAAGTGGGGTGAAGTTGTGATTGCCCTGAAATTGGAAGGGAATAGTGTGAAGTTATCTGCTCAAGTTGAAAGGCTTTACTCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGGCGTCCTGAAAAGCTAGCTTTCCGATCTGCCAGCAACAAAGGCTCCTTTTGCTCCCTTTCCACGTCTTCCTCTTTAGAAGAAGGTCCGCTTAGGAAGAAGAGGATTTCAACAGTGAGTTTGGCTCCTATGATGGATAGTAAAGATGATCAGAAGGCCACAGAAATGTCCAAGCAATACTCTTGCCACATGACAGCTGGGGCTGGGTATGTGCAACAGCCTGTGCTTTTACCAACACCTCCGAAAGAAAAGAAGAAACGCCGAGGTGCCCCGGTGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCTCGGTTGAAAACTTGCAATGAGGTCTTGGATGGAAAAATACTGAGTATGGCTATTCATTCATGGAGGACCATGTCTGAAACTGAGAAACAGCCATATGTAGAGGAAAGCAAGAAGAACAAAGAAGAAATTAAGGAAGCAATGGTTAGACGCAGTAAACAGCAGAGCAGCCAAGATACCAGCCAAGAGACCAGGGAAGAGAAGTGGTCTAGTATTTGTGGTGATTACCATGTAACTTTGCAACCTGAAGCAGATGTAGCTCTTAAAATGACTGAAAAAGCACCAATGGATCCTCCATTTCAGATGGATTGGGATGGAAATTGTTCACTTGATTTTGCAACAAGGGAATCCGAGTAA 1047 0.4432 MEKKEEIILPLPSETHLKDLPNVSSTSRPVGSHKGHCSPGDDSDSFYDKLVELLESSGLTLINSHHLTNLKLLSVFVSIEVGRERKWGEVVIALKLEGNSVKLSAQVERLYSHLLYQFEQLYFYRRPEKLAFRSASNKGSFCSLSTSSSLEEGPLRKKRISTVSLAPMMDSKDDQKATEMSKQYSCHMTAGAGYVQQPVLLPTPPKEKKKRRGAPVGRKTAYQIFLKHECARLKTCNEVLDGKILSMAIHSWRTMSETEKQPYVEESKKNKEEIKEAMVRRSKQQSSQDTSQETREEKWSSICGDYHVTLQPEADVALKMTEKAPMDPPFQMDWDGNCSLDFATRESE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01457 348 Gene3D High mobility group box domain 204 305 IPR036910 -
Vian3g01457 348 Pfam HMG-box domain 217 279 IPR009071 -
Vian3g01457 348 CDD HMG-box_SF 219 273 - -
Vian3g01457 348 Gene3D - 36 138 IPR036431 GO:0003677
Vian3g01457 348 SUPERFAMILY HMG-box 198 278 IPR036910 -
Vian3g01457 348 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 27 302 - -
Vian3g01457 348 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 215 282 IPR009071 -
Vian3g01457 348 MobiDBLite consensus disorder prediction 277 298 - -
Vian3g01457 348 SUPERFAMILY ARID-like 42 127 IPR036431 GO:0003677
Vian3g01457 348 MobiDBLite consensus disorder prediction 20 41 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01457 42 279 ARID Transcription Factor Family AT3G13350 21.509 4.57e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01457 - - var:108325455 646.351