Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01454 ATGCTTGAACTTGAGGGGTTTGACCGTATGATTGCCCGAACATGTGAGGAAGAGGAGGAGGGATCAACGGAGGAAGAAGAAAAAGCAGAAGATGAGGACGGCAGCAGAGTGAGGAAGTTGATCATGCCGCAGAAAATATGCGATATGTCTTCCTTGACGTCGTGGCGATCGGCGGCGAGAAGCCATGGAGAACAGGATTGGATAAAGGATTTCCAGGGATTCCTGAACGACTTGCAGGATTGGGAACTTTCTAGAAAAGATAAAACACAAACAGTGAAGTCACAAAAGGAAAATGTTGCTTCGTCTTCTCGACTTACTGGATCTGTGGGCGTGGATAAGGCAGCAAAAGCAGATACTAAATCTTTTGATCGTGCAGGAAATTCTCCAGGATTGTACGATTTATCAAAAATTAGTGATCCTTTGAATCGGTTGCATGGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCCTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAGATCTTGATGATCGTTACATAAAAGCATATTCACGAAGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCAATGGAAGATGCTGAATTTGCTTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCCGATGCTAAATCTTTGTATGAGAAAGATATTCTTCAGAAAGCATCAGGAGCTATGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGGAAAAAGTTAACGGAGGTAGCATCCACCCCATTTCACATGGTACTCAAAAGTCCGGTCCAGCTGAAATTAATCATAAAAAGGTTAATGAGCAGCAAATACCTGTTAAAGAATCACTTATAACAGAGGAGGTCGATAGCAGAGACACAATAACCAGAAAAAGGCCTCAAGCACAAGGAGGTGATGATTCTAGGAAAGGTTTGAGTGCAAGTAACAGTTTGGAGCAGAGAAATCACAGAATTATTAAGCCCGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCTGAAGCTGCTAAAAACATAACACCACCAACCACTGCGTACCAGTTTGAGGTCTCATGGAGATCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCGCGAATTACCGAAAATATTCAAAAATGCTTTATCTTCTACCGTACTTGTTGACATCATCAAGTGTCTCTCATCTTTTTTCACTGAGGACATGGATCTGGTTGTCAGTTATATGGAGTATTTGATCAAAGTTCCAAGATTTGACATGATTGTAATGTGCCTCTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAAAAGTGAGGCAACACCAATTGAGTATGCAGAGATTCTAGACAACCTCCGATCAAAGTTCTGCCTTGGACAGTGA 1593 0.4193 MLELEGFDRMIARTCEEEEEGSTEEEEKAEDEDGSRVRKLIMPQKICDMSSLTSWRSAARSHGEQDWIKDFQGFLNDLQDWELSRKDKTQTVKSQKENVASSSRLTGSVGVDKAAKADTKSFDRAGNSPGLYDLSKISDPLNRLHGSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGAMRSTVQGTQKVGKSEEKVNGGSIHPISHGTQKSGPAEINHKKVNEQQIPVKESLITEEVDSRDTITRKRPQAQGGDDSRKGLSASNSLEQRNHRIIKPEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRSFSGDLALQARLLKAISPRELPKIFKNALSSTVLVDIIKCLSSFFTEDMDLVVSYMEYLIKVPRFDMIVMCLSSTNKDDIRKIWDEVFKSEATPIEYAEILDNLRSKFCLGQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01454 530 MobiDBLite consensus disorder prediction 1 37 - -
Vian3g01454 530 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Vian3g01454 530 MobiDBLite consensus disorder prediction 1 17 - -
Vian3g01454 530 Pfam Tetratricopeptide repeat 191 219 IPR019734 GO:0005515
Vian3g01454 530 SMART tpr_5 156 189 IPR019734 GO:0005515
Vian3g01454 530 SMART tpr_5 190 222 IPR019734 GO:0005515
Vian3g01454 530 SMART tpr_5 223 256 IPR019734 GO:0005515
Vian3g01454 530 Coils Coil 12 32 - -
Vian3g01454 530 SUPERFAMILY TPR-like 152 268 IPR011990 GO:0005515
Vian3g01454 530 Pfam Potential Monad-binding region of RPAP3 406 495 IPR025986 -
Vian3g01454 530 Gene3D Tetratricopeptide repeat domain 149 254 IPR011990 GO:0005515
Vian3g01454 530 ProSiteProfiles TPR repeat profile. 156 189 IPR019734 GO:0005515
Vian3g01454 530 MobiDBLite consensus disorder prediction 281 377 - -
Vian3g01454 530 MobiDBLite consensus disorder prediction 336 356 - -
Vian3g01454 530 MobiDBLite consensus disorder prediction 281 296 - -
Vian3g01454 530 PANTHER OS05G0129900 PROTEIN 64 529 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01454 160 226 U-box Gene Family AT3G07370 39.706 1.62e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01454 K23002 - gmx:100784528 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01454 3 15918096 15927454 Vian3g01454 3 15918096 15927454 ECH