Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01440 ATGGGAAGCTGTAGCAGGAAGAAAAACCAAGATCTGGAGTTAGAGAAAGCTCGCTTAATCAGTTTAGCACTCGAATTCGGTTTCGACGAATCCTCCGCCAACAAATGCCTCCACCGTCTCATCGATCTCTACGGAGAAGACGGTCGCGATTTCATCACCGTCGAGCACTGCGGCGACGATTTTATCGCGACTCTAGCGGAGTCTATGCAGGCTACTGAAGATTGGGATGACCTTCAGGAAATGGAATCACAAGCGTGCGGAACTTTGACGCACGTGCTTGACAAAACCGTTGCTCCGGATGCCGATGCGGATAACGACGACGCTTCGAGAAACTACATTAATGTTGTTGACGACTCGCCTCAACCGCAGAAACGCAAATGCCGCGGTAATGTAGTGGAGTTGGATTCGAGTGACGATGAGGATATTCACTGTAGTGTTCCGAGGGGAAAATCTGTGGATTACAGAAGTGGCATCACTCAAGGCTCGGTTTCATCAACTTCCAGCAAAATGCAATCCTCCTTTGCATCAAGGGATAAAAGTGGTACTCTCACTTATGAAGAATTGCAAGCTCTAGATGATATTGAATTGGCCAATGTTGTTATCTTTGGTAATGTTACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCCTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTCACCGTAGTTGTATCTCCATTACTCTCACTCATTCAGGATCAGATAATAACACTGAACCTCAAGTTTGGAATACCTGCTACTTTCTTAAATTCTCAACAAACTGCTTCTCAGGCCACAGCTGTGCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTTTTATATGTAACACCCGAGAGAATTGCTGGCAACCAATCGTTTCAGGAGATCCTGAAATGCATGCATCGGAAGGGACAACTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCCCTAAAGCAAAAGTTTCCAGATGTACCCGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTGAGGACATACTAAATGCTCTAAGAATTCCCCATGCACTCGTTCTTGAAAGAAGCTTTGACCGACCAAATTTGAAGTATGAAGTAATTGGCAAGACAAAGGAACCACTAAAGAAACTCGGACAGCTACTAATTGATCGCTTCAGGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCTAAATTTTTAAATGAGAAATGCAAGATCAAAACACTGTATTACCATGCTGGCTTGGCTGCCCGGCAGAGAATAGCTGTTCAAAAGAAATGGCATGACGGGGAGGTCCATATTGTGTGTGCAACTATTGCTTTCGGAATGGGGATAGACAAACCTGATGTTCGCTTCGTCGTCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTCCTTCAGTTTGCATTGTTCTTTACCAAAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGTCAGGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGTTCAAGCCAAAAAGATGCAAGCGTACTGTGAAATAGAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTCGGGGAATCTTTTGATAGAAAATCTTGCAAGTATGGATCTAGCCCCTGTGATAACTGTATCAAGACTGTATTATGA 1827 0.433 MGSCSRKKNQDLELEKARLISLALEFGFDESSANKCLHRLIDLYGEDGRDFITVEHCGDDFIATLAESMQATEDWDDLQEMESQACGTLTHVLDKTVAPDADADNDDASRNYINVVDDSPQPQKRKCRGNVVELDSSDDEDIHCSVPRGKSVDYRSGITQGSVSSTSSKMQSSFASRDKSGTLTYEELQALDDIELANVVIFGNVTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIAGNQSFQEILKCMHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQKFPDVPVMALTATATHAVREDILNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKKLGQLLIDRFRNQCGIVYCLSKSECVEVSKFLNEKCKIKTLYYHAGLAARQRIAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVVHNTMSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMIRNGQGYKKESFKTAMVQAKKMQAYCEIEVECRRQTLLKHFGESFDRKSCKYGSSPCDNCIKTVL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01440 608 FunFam ATP-dependent DNA helicase 188 398 - -
Vian3g01440 608 CDD DEXHc_RecQ 201 398 - -
Vian3g01440 608 Gene3D - 164 398 IPR027417 -
Vian3g01440 608 PANTHER DNA HELICASE RECQ FAMILY MEMBER 189 603 - -
Vian3g01440 608 Pfam Helicase conserved C-terminal domain 415 522 IPR001650 -
Vian3g01440 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 391 IPR014001 -
Vian3g01440 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 544 IPR027417 -
Vian3g01440 608 FunFam ATP-dependent DNA helicase 399 606 - -
Vian3g01440 608 NCBIfam RecQ family ATP-dependent DNA helicase 201 606 IPR004589 GO:0004386|GO:0006310
Vian3g01440 608 SMART helicmild6 441 523 IPR001650 -
Vian3g01440 608 SMART ultradead3 203 407 IPR014001 -
Vian3g01440 608 Pfam RecQ zinc-binding 535 603 IPR032284 -
Vian3g01440 608 Pfam DEAD/DEAH box helicase 209 377 IPR011545 GO:0003676|GO:0005524
Vian3g01440 608 CDD SF2_C_RecQ 399 532 - -
Vian3g01440 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 566 IPR001650 -
Vian3g01440 608 Gene3D - 399 607 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01440 Vian-Chr3 15754077 15765158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01440 415 521 Eukaryotic Initiation Factors Gene Family AT5G11170 32.710 4.83e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01440 K10899 - gmx:100806070 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01440 3 15754077 15765158 Vian3g01440 3 15754077 15765158 ECH