Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01436 ATGTCGTATCGCCCAAGCGGGAACTCCAGGACCGAGGTCCGCCGGAACCGGTACAAGGTGGCGGTGGATGCCGAGGAAGGTCGGAGACGGCGAGAAGACACCATGGTGGAGATCCGGAAGAACCGCAGAGAAGAGAGTTTGCAGAAGAAGAGGCGTGAAGGGCTCCAACCTCAACAGATTCCTGCTTCCATTCACTCTACTTTAGTAGAGAAGAAGTTGGAACACCTACCATCAATGGTTGCTGGTGTTTGGTCTGAGGACAATAACCTGCAGCTCGAAGCAACGACTCAGTTTAGGAAGCTGCTTTCGATTGAACGAAGTCCTCCGATTGAGGAAGTTATTCAGACTGGTGTAGTTTCTCGGTTTGTCGAATTTCTGATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCCGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAAAACACCAAGGTGGTGATTGACCATGGGGCAGTACCAATATTCGTGAAGCTACTTGCTTCCCCCAGTGATGATGTCCGTGAACAGGCGGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGACCTTGTTCTCGGTCATGGAGCATTGATTCCTTTGTTAGCTCAATTGAACGAACAGGCGAAGCTTTCTATGCTTAGAAATGCTACTTGGACACTTTCTAACTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTGCCTGCTCTTGCACGTCTTATCCATTCAAATGATGAAGAAGTCTTGACTGATGCATGTTGGGCACTGTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTGATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTAATGCATCCATCCCCTTCAGTACTAATTCCTGCTCTTAGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGGTTATCATCAATCATCAGGCACTTCCTTGCCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATTAAGAAGGAAGCTTGTTGGACTATATCGAACATTACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATTTAATTACTCCTCTGGTCAACTTACTTCAAAATGCCGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGTTCCCACGAACAAATCAAGTTCCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTGTCCCGATCCTAGGATTGTAACAGTTTGCTTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAGTATTGGCAACACTGGTGATGTGAATCTATATGCCCAAATGATTGATGACGCGGAGGGGCTGGAGAAAATTGAGAACCTCCAGAGTCATGACAATACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATATTGGTTGGAGGAGGAAGACGAGACTATGCCTCCTGGGGATGCATCTCAGTCAGGGTTCAACTTTGGTAACAATGATGCTCCTGCTGTGCCTTCCGGTGGATTCAACTTTAATTAG 1599 0.4565 MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQIPASIHSTLVEKKLEHLPSMVAGVWSEDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLITPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKSIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGNNDAPAVPSGGFNFN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01436 532 FunFam Importin subunit alpha 13 52 - -
Vian3g01436 532 MobiDBLite consensus disorder prediction 502 532 - -
Vian3g01436 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Vian3g01436 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Vian3g01436 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Vian3g01436 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Vian3g01436 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Vian3g01436 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Vian3g01436 532 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Vian3g01436 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Vian3g01436 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Vian3g01436 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Vian3g01436 532 FunFam Importin subunit alpha 74 497 - -
Vian3g01436 532 Pfam Atypical Arm repeat 458 504 IPR032413 -
Vian3g01436 532 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Vian3g01436 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vian3g01436 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Vian3g01436 532 Gene3D - 74 497 IPR011989 -
Vian3g01436 532 Gene3D - 12 52 IPR036975 GO:0006606
Vian3g01436 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Vian3g01436 532 PANTHER IMPORTIN ALPHA 14 502 - -
Vian3g01436 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Vian3g01436 532 SMART arm_5 106 147 IPR000225 GO:0005515
Vian3g01436 532 SMART arm_5 403 443 IPR000225 GO:0005515
Vian3g01436 532 SMART arm_5 360 400 IPR000225 GO:0005515
Vian3g01436 532 SMART arm_5 234 273 IPR000225 GO:0005515
Vian3g01436 532 SMART arm_5 149 189 IPR000225 GO:0005515
Vian3g01436 532 SMART arm_5 275 315 IPR000225 GO:0005515
Vian3g01436 532 SMART arm_5 190 232 IPR000225 GO:0005515
Vian3g01436 532 SMART arm_5 317 358 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01436 Vian-Chr3 15726929 15731022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01436 153 422 U-box Gene Family AT1G23030 23.333 1.32e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01436 K15042 - gmx:100797267 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01436 3 15726929 15731022 Vian3g01436 3 15726929 15731022 ECH
Vian2g02700 2 47902323 47909004 Vian3g01436 3 15726929 15731022 ECH
Vian3g01436 3 15726929 15731022 Vian2g02700 2 47902323 47909004 ECH
Vian2g02700 2 47902323 47909004 Vian3g01436 3 15726929 15731022 PCT