LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g01436	ATGTCGTATCGCCCAAGCGGGAACTCCAGGACCGAGGTCCGCCGGAACCGGTACAAGGTGGCGGTGGATGCCGAGGAAGGTCGGAGACGGCGAGAAGACACCATGGTGGAGATCCGGAAGAACCGCAGAGAAGAGAGTTTGCAGAAGAAGAGGCGTGAAGGGCTCCAACCTCAACAGATTCCTGCTTCCATTCACTCTACTTTAGTAGAGAAGAAGTTGGAACACCTACCATCAATGGTTGCTGGTGTTTGGTCTGAGGACAATAACCTGCAGCTCGAAGCAACGACTCAGTTTAGGAAGCTGCTTTCGATTGAACGAAGTCCTCCGATTGAGGAAGTTATTCAGACTGGTGTAGTTTCTCGGTTTGTCGAATTTCTGATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCCGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAAAACACCAAGGTGGTGATTGACCATGGGGCAGTACCAATATTCGTGAAGCTACTTGCTTCCCCCAGTGATGATGTCCGTGAACAGGCGGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGACCTTGTTCTCGGTCATGGAGCATTGATTCCTTTGTTAGCTCAATTGAACGAACAGGCGAAGCTTTCTATGCTTAGAAATGCTACTTGGACACTTTCTAACTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTGCCTGCTCTTGCACGTCTTATCCATTCAAATGATGAAGAAGTCTTGACTGATGCATGTTGGGCACTGTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTGATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTAATGCATCCATCCCCTTCAGTACTAATTCCTGCTCTTAGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGGTTATCATCAATCATCAGGCACTTCCTTGCCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATTAAGAAGGAAGCTTGTTGGACTATATCGAACATTACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATTTAATTACTCCTCTGGTCAACTTACTTCAAAATGCCGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGTTCCCACGAACAAATCAAGTTCCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTGTCCCGATCCTAGGATTGTAACAGTTTGCTTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAGTATTGGCAACACTGGTGATGTGAATCTATATGCCCAAATGATTGATGACGCGGAGGGGCTGGAGAAAATTGAGAACCTCCAGAGTCATGACAATACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATATTGGTTGGAGGAGGAAGACGAGACTATGCCTCCTGGGGATGCATCTCAGTCAGGGTTCAACTTTGGTAACAATGATGCTCCTGCTGTGCCTTCCGGTGGATTCAACTTTAATTAG	1599	0.4565	MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQIPASIHSTLVEKKLEHLPSMVAGVWSEDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLITPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKSIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGNNDAPAVPSGGFNFN	532

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vian3g01436	532	FunFam	Importin subunit alpha	13	52	-	-
Vian3g01436	532	MobiDBLite	consensus disorder prediction	502	532	-	-
Vian3g01436	532	Pfam	Armadillo/beta-catenin-like repeat	191	232	IPR000225	GO:0005515
Vian3g01436	532	Pfam	Armadillo/beta-catenin-like repeat	404	441	IPR000225	GO:0005515
Vian3g01436	532	Pfam	Armadillo/beta-catenin-like repeat	245	272	IPR000225	GO:0005515
Vian3g01436	532	Pfam	Armadillo/beta-catenin-like repeat	360	399	IPR000225	GO:0005515
Vian3g01436	532	Pfam	Armadillo/beta-catenin-like repeat	318	358	IPR000225	GO:0005515
Vian3g01436	532	Pfam	Armadillo/beta-catenin-like repeat	149	188	IPR000225	GO:0005515
Vian3g01436	532	Pfam	Armadillo/beta-catenin-like repeat	276	314	IPR000225	GO:0005515
Vian3g01436	532	Pfam	Armadillo/beta-catenin-like repeat	107	147	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g01436	Vian-Chr3	15726929	15731022	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g01436	153	422	U-box Gene Family	AT1G23030	23.333	1.32e-06	49.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g01436	K15042		-	gmx:100797267	1039.64

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Vian3g01436	3	15726929	15731022	Vian3g01436	3	15726929	15731022	ECH
Vian2g02700	2	47902323	47909004	Vian3g01436	3	15726929	15731022	ECH
Vian3g01436	3	15726929	15731022	Vian2g02700	2	47902323	47909004	ECH
Vian2g02700	2	47902323	47909004	Vian3g01436	3	15726929	15731022	PCT

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