Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01434 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAACACAGAGATGCGTTGAAGGCTGTTCGCATTCCCTCCATCTCTTCGCCGCAGTCCACCTCCTCCCGCGGTGGCGGTGGCCCTGTCATCGAATTGGTCAGCTCTTCGCTTCTCAATCCCAATCGCTCTTACACTCCGCTTAGTACCGATGATCCTGGTAATTCGAGTCGTGGTCCAAATGCAGTCAATTTGGGGCTACCTCCTGCGTGGGTGGATTTATCGGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCCGAGTTGGCCAAGGCTCATGCAAAGGCTTTGATGCCGTCATTTGGAGATGGGAAAGAAGATCAACATGCTATTGAGACTCTAACACACGAGATAACTGACTTAATAAAGAGGTCGGAGAAGAGACTCAGAAGACTTTCTGCTTCTGGGCCTTCTGAGGATTCCAATGTCAGAAAAAACGTGCAGCGATCTCTTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTACGCAAGAAACAATCAACTTATTTAAAGCGCCTCAGACTACAGAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAATTTGAATGGAGGTAAATCAAGATTTGAAGATGATGATTTAGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTGAAGAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAGCAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATCATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATCGTCGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTCGAGGATGGGCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAAGGGGGTATGGTAATGTGTGCTACTGTGCTTGTCATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 984 0.4461 MATRNRTLLFRKHRDALKAVRIPSISSPQSTSSRGGGGPVIELVSSSLLNPNRSYTPLSTDDPGNSSRGPNAVNLGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQHAIETLTHEITDLIKRSEKRLRRLSASGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGGKSRFEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLIIKEIIL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01434 327 Coils Coil 85 105 - -
Vian3g01434 327 FunFam Syntaxin-43 78 285 - -
Vian3g01434 327 PANTHER SYNTAXIN 85 312 IPR045242 -
Vian3g01434 327 SMART tSNARE_6 226 293 IPR000727 -
Vian3g01434 327 ProSitePatterns Syntaxin / epimorphin family signature. 237 276 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian3g01434 327 SUPERFAMILY t-snare proteins 77 286 IPR010989 GO:0016020|GO:0016192
Vian3g01434 327 MobiDBLite consensus disorder prediction 22 73 - -
Vian3g01434 327 Gene3D - 78 285 - -
Vian3g01434 327 SMART SynN_4 72 187 IPR006011 GO:0016020
Vian3g01434 327 CDD SNARE_syntaxin16 236 292 - -
Vian3g01434 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Vian3g01434 327 MobiDBLite consensus disorder prediction 45 72 - -
Vian3g01434 327 Pfam SNARE domain 267 319 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01434 Vian-Chr3 15714915 15719427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01434 1 316 SNARE and Associated Proteins AT3G05710 75.926 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01434 K08489 - gmx:100796741 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01434 3 15714915 15719427 Vian3g01434 3 15714915 15719427 ECH
Vian2g02850 2 49358921 49364202 Vian3g01434 3 15714915 15719427 ECH