Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01430 ATGAAACTAAGACTAGTGAGTGGTATTGCAGCCTCAAGAAGGAATGAAGCAGCTGGGTGGCTAAGAAAGACAGTTGGAGTTGTTGGAGGGAAAGACATTCCAGATGAGCCTACTGAAGAAGATTTCAGGATTGCATTACGAAGTGGCATTGTCCTTTGCAATGCTCTTAACAAAATTCAACCCGGAGCAGTGCCCAAGGTAGTTGAAGTCCCCTGCGATAGTGTTATCATTCCTGATGGGGCACCTCTGTCTACTTACCAATACTTTGAAAATGTAAGGAATTTTCTGGTAACTATGGAAGAAATGGGGCTTCCCACCTTTGAAGTGTCTGATATAGAACAGGGAGGAAAATCTTCGAGGATAGTGAATTGTGTTTTAGCACTTAAGTCTTACAGTGAATGGAAACAGGGAGGAAAAAATGGGTCATGGAAATATGGTGGGAATCCAAAGCCACCTACCAATGCTAAACCAGCTATTATGATGAAAGTCTCAGAACCATTCATGAGGTCTTTGTCAAAGGGTAGTAGGTTAGGCGATAAAGATGGGTTACTGAATGATATATCTACAAACAGTGAAGGGGGTTCTATACCCTCCCTGAATTTACTAATTCGTGAAATTTTATCTGTTAAGAAGCTAGAAGAAATTCCCACTGTGGTGGAGTCTCTACTTAGCAGAGTCATGGAGGAGTTTGAAAAGCGCTTGCTAATCCAACAAGAAATGTTCAAAACAACTCAAAACTATAAGGCACTGCCTGAAGCAGAGGATTCCAATGTGAAATCTGCCTGTAATGGTGAAGAGATGGAAGAAGATGGAGATGTGGTGGTTAAACACAAGGAATTTGTTGATGTGAAGGACAATGTCGACGAAGAACCAAACAGCCAGTATTTTAAGCAGCAAGAGTTAATTCAGCAGCAAAACGAGAACGTCCAGGAATTGAAAATGATGGTTCATCAAACAAAAACAGGAATACAGGTTCTGCAAAATAAATACCAGGAGGATATGATCTATCTAAGTAAACACCTGCATGGCCTAGCTTCTGCTGCTTCAGGATATCAGAAAATTCTTGAAGAAAACCGCAAGCTATATAATCAATTGCAAGACCTGAAAGGAAATATTAGGGTGTACTGTAGAGTTCGTCCCTCAAAAGGTGCCCAACCAAATCATTGCTCTGTCAGTAACATAGATGAAGGAAGTATATCACTCATAGTGCCATCCAAAAACGGGAAAGATGGGAAGAAGACATTTAATTTCAACAGAGTCTTTGGTCCTTCTTCAACCCAAGCGGAGGTTTTCTCAGATACAAAACCACTGATTCGTTCGGTTCTTGATGGCTACAACGTGTGTATATTTGCTTATGGTCAGACAGGATCAGGAAAAACACACACTATGGATTTATGCATGCCATTTTACTTTAGTGATTATATTGCTCATGTTTGTGGCCCTTTAACACTTCATACATTAGAAATCCGCAACAGTTCTCATAATGGCATTAACGTGCCAGATGCAAACCTTGTTCCTGTTTCATCCACTTCCGATGTCTTAAAATTAATGAACTTGGGACAAAATAACCGGGCAGTTAGTTCTACTGCCATGAATGATCGGAGTAGTCGTTCTCATAGCTGCTTGACAGTTCATGTTCACGGAAGAGAGCTAGCGTCAGGGAATAGTCTTCGTGGTTGTATCCACTTAGTTGACTTGGCAGGAAGTGAGAGGGTTGATAAATCTGAGGTCACAGGAGATAGGCTGAAGGAGGCTCAACATATTAACAAGTCGCTTTCTGCATTAGGAGATGTAATTGCTTCACTTGCCCAAAAGCAATCACACGTTCCTTATAGGAACAGCAAACTTACTCAGCTACTTCAAGATTCTCTCGGAGGCCAAGCAAAGACACTTATGTTTGTTCATGTTAGTCCCGAGCCAGATGCCATTGGAGAAACAATCAGTACATTGAAGTTCGCAGAAAGGATTTCGATTCTGAAGGCAACCTCCGCCAGGAAGGATGGAGAATCGGAACAATTTCATCAGTCTGCAAATAGCATTTCTGAAACTCCAAAGTCCAAATCTCTATTGTCTTCCACTGCACGGTCACCTACTTCGTCTCATGGAAATCGTAAGCCACCAAGGGAAGATTCCAGTAGCACGGTGGAGGACAAGAAAAAGGGTAGCCCGAAGCTCGCGAAAAGAGGAAGCCTTGACCCCTTGGACGTTCATAGGAACTCACCACCTTGGCCACATCATGCAGAGGAAAATGGAAAAGAGGATGATAAGGAATTGGTTTCTGGGGATTGTCTTGGTAAGCGTACAAAAAGGAATGGCCGCTTAAGTACTGAAAACAACATCGTGGGAGACTGTGATACAGAAAGCAAGCAGTCATCTTCTCCAACGCTAAGTCCCTTGGATATTTTTGACCCTTCCAAAATATGCACGGAGGAGACCACCATAAATGACTGTGATGAATTTGAGTTAGCAACCAGTGAAAGTTCAGAATCAGACAAGAGTTGGGAATCACATGTACACGTACCAAAAGCAACCACTCATTCCAACGGAGTAGCAGCTAAAACAAAAAAATCACCAAATCCAAGACAAGCCAAGAATCAAGAAAACAGGAGTAAGATCCCGTCATTGTCTCCTTCATCATCAAGGAGACAACCTACGGTAGTTAGTCAACAGAGAAAGCATCTAGATGCAAAAAGAAGAACTGGAAATGCCAAATGA 2715 0.4203 MKLRLVSGIAASRRNEAAGWLRKTVGVVGGKDIPDEPTEEDFRIALRSGIVLCNALNKIQPGAVPKVVEVPCDSVIIPDGAPLSTYQYFENVRNFLVTMEEMGLPTFEVSDIEQGGKSSRIVNCVLALKSYSEWKQGGKNGSWKYGGNPKPPTNAKPAIMMKVSEPFMRSLSKGSRLGDKDGLLNDISTNSEGGSIPSLNLLIREILSVKKLEEIPTVVESLLSRVMEEFEKRLLIQQEMFKTTQNYKALPEAEDSNVKSACNGEEMEEDGDVVVKHKEFVDVKDNVDEEPNSQYFKQQELIQQQNENVQELKMMVHQTKTGIQVLQNKYQEDMIYLSKHLHGLASAASGYQKILEENRKLYNQLQDLKGNIRVYCRVRPSKGAQPNHCSVSNIDEGSISLIVPSKNGKDGKKTFNFNRVFGPSSTQAEVFSDTKPLIRSVLDGYNVCIFAYGQTGSGKTHTMDLCMPFYFSDYIAHVCGPLTLHTLEIRNSSHNGINVPDANLVPVSSTSDVLKLMNLGQNNRAVSSTAMNDRSSRSHSCLTVHVHGRELASGNSLRGCIHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKQSHVPYRNSKLTQLLQDSLGGQAKTLMFVHVSPEPDAIGETISTLKFAERISILKATSARKDGESEQFHQSANSISETPKSKSLLSSTARSPTSSHGNRKPPREDSSSTVEDKKKGSPKLAKRGSLDPLDVHRNSPPWPHHAEENGKEDDKELVSGDCLGKRTKRNGRLSTENNIVGDCDTESKQSSSPTLSPLDIFDPSKICTEETTINDCDEFELATSESSESDKSWESHVHVPKATTHSNGVAAKTKKSPNPRQAKNQENRSKIPSLSPSSSRRQPTVVSQQRKHLDAKRRTGNAK 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01430 904 SUPERFAMILY Calponin-homology domain, CH-domain 14 146 IPR036872 -
Vian3g01430 904 MobiDBLite consensus disorder prediction 840 890 - -
Vian3g01430 904 Pfam Microtubule binding 357 464 IPR031852 GO:0008017
Vian3g01430 904 Coils Coil 351 371 - -
Vian3g01430 904 SMART ch_5 13 131 IPR001715 GO:0005515
Vian3g01430 904 Pfam Calponin homology (CH) domain 12 133 IPR001715 GO:0005515
Vian3g01430 904 MobiDBLite consensus disorder prediction 702 773 - -
Vian3g01430 904 MobiDBLite consensus disorder prediction 825 839 - -
Vian3g01430 904 Gene3D Kinesin motor domain 312 468 IPR036961 -
Vian3g01430 904 PRINTS Kinesin heavy chain signature 444 465 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vian3g01430 904 PRINTS Kinesin heavy chain signature 560 578 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vian3g01430 904 PRINTS Kinesin heavy chain signature 529 546 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vian3g01430 904 PRINTS Kinesin heavy chain signature 609 630 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vian3g01430 904 ProSiteProfiles Kinesin motor domain profile. 371 659 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vian3g01430 904 MobiDBLite consensus disorder prediction 673 701 - -
Vian3g01430 904 Gene3D Kinesin motor domain 476 695 IPR036961 -
Vian3g01430 904 PANTHER KINESIN-LIKE PROTEIN KLP-3 488 879 IPR027640 GO:0003777|GO:0007018
Vian3g01430 904 SMART kinesin_4 369 665 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vian3g01430 904 ProSiteProfiles Calponin homology (CH) domain profile. 11 133 IPR001715 GO:0005515
Vian3g01430 904 Gene3D - 9 146 IPR036872 -
Vian3g01430 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 656 IPR027417 -
Vian3g01430 904 MobiDBLite consensus disorder prediction 664 804 - -
Vian3g01430 904 MobiDBLite consensus disorder prediction 822 904 - -
Vian3g01430 904 CDD CH_AtKIN14-like 13 130 - -
Vian3g01430 904 Pfam Kinesin motor domain 485 656 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vian3g01430 904 MobiDBLite consensus disorder prediction 774 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01430 Vian-Chr3 15676998 15682490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01430 359 656 Calmodulin-binding Proteins AT5G65930 40.000 5.07e-66 239