Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01423 ATGGGGCATTTTTCATCTGCGTTCAATAGGTTGGCAAAGTCCTTTGCAACCAAGAGAAGTGGGAGTTCTGATGGATGCAACGGAAGAGAAGCTGCGGAAGCAATGGCAAAGGAAGCCAAAAAAAATCACTTCATGTTGCATAGCTCCGGCACCATTAATGTTGACGGTTCAGACAACTTTGCCTCACTTTTCTCCAAAAAAGGAAAGAAAGGAGTCAATCAGGATTGCTGCGTAGTATGGGAAGAATTTGGGTGCCAAGAGGACATGATTTTCTGCGGGATTTTTGACGGGCACGGGCCATGGGGTCACTTTGTGGCCAAGAGAGTAAGAGAGTCAATGCCACCATGTTTGCTATGCAACTGGCAGGAGACACTTTCCCAAACTTCACTTGATCCAGATGTTGATGTTGATATTACGGCAGAGAAAAAGCAACACCGGTTCAATATATGGAAGCACTCTTACTTGAAGACCTGTGCTGCCATTGATCGAGAACTAAAGCAGAATCGCAAGATAGATTCATTTTTCAGCGGAACAACTGCCCTGTCCATTGTTAGACAGGGTGAATTAATTGTAATTGCAAACGTTGGTGACTCTCGCGCCGTGTTAGCCACAGCATCAGATGATGGAAGTTTGGTAGCAGTTCAGTTGACAGTAGATTTCAAGCCCAGTTTACCTCAGGAAGCGGAGAGAATAGTGGAGTGCAAAGGACGAGTTTTCTGCTTGGAAGACGAGCCTGGGGTGTACAGGGTGTGGTTACCGGAGGAGGAGTCACCAGGACTTGCCATGTCAAGGGCTTTTGGTGACTACTGCGTCAAAGAGTATGGTCTTATTTCAGTGCCTGAAGTAACACACAGGAACATAACCAGCAAAGACCAGTTTGTTGTACTAGCCACTGATGGGGTGTGGGATGTAATCTCCAATCAAGAAGCAGTGGATATTGTGCGTTCAACAGCAGACAGAACAGAGTCTGCGAAACATTTGGTGGAGTGTGCGATGCGTGCATGGAAACGCAAGAGGAGGGGCATTGCAATGGACGATATTTCAGCTATTTGTCTCTTCTTTCACTCTTCACCATCACTTCACCAAGTTCATGCCACCCTAGAATAG 1107 0.4634 MGHFSSAFNRLAKSFATKRSGSSDGCNGREAAEAMAKEAKKNHFMLHSSGTINVDGSDNFASLFSKKGKKGVNQDCCVVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPPCLLCNWQETLSQTSLDPDVDVDITAEKKQHRFNIWKHSYLKTCAAIDRELKQNRKIDSFFSGTTALSIVRQGELIVIANVGDSRAVLATASDDGSLVAVQLTVDFKPSLPQEAERIVECKGRVFCLEDEPGVYRVWLPEEESPGLAMSRAFGDYCVKEYGLISVPEVTHRNITSKDQFVVLATDGVWDVISNQEAVDIVRSTADRTESAKHLVECAMRAWKRKRRGIAMDDISAICLFFHSSPSLHQVHATLE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01423 368 PANTHER PROTEIN PHOSPHATASE 45 352 IPR015655 GO:0004722|GO:0006470
Vian3g01423 368 Pfam Protein phosphatase 2C 84 332 IPR001932 -
Vian3g01423 368 SMART PP2C_4 51 352 IPR001932 -
Vian3g01423 368 CDD PP2Cc 59 354 IPR001932 -
Vian3g01423 368 SUPERFAMILY PP2C-like 61 356 IPR036457 -
Vian3g01423 368 Gene3D - 55 356 IPR036457 -
Vian3g01423 368 FunFam Probable protein phosphatase 2C 34 51 356 - -
Vian3g01423 368 ProSiteProfiles PPM-type phosphatase domain profile. 60 354 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01423 Vian-Chr3 15615555 15617171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01423 1 355 PP2C-type Phosphatase Gene Family AT3G05640 69.832 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01423 - - gmx:100793051 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01423 3 15615555 15617171 Vian3g01423 3 15615555 15617171 ECH
Vian2g02696 2 47840541 47848959 Vian3g01423 3 15615555 15617171 PCT
Vian6g00777 6 24797463 24798713 Vian3g01423 3 15615555 15617171 PCT