Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01421 ATGTCGTTTGAGCCGCTGATTCCACCGTCGGAAGCATTGTCAACTTCTTATTCCTTCAGGCGATGCGGCGAAACGGTGTGGATTTTCGATGAGTTGCCGAAGGCCACCGTCGTTTCCGTGTCGAGGCCAGACACCGGAGACATTAGCTCAATACTCCTTTCTTATACCATTCAGTTGCAGTACAAACAGGCACAGACTCACATACTCATTTGCTTTTTTCTATTTAATTGGCGTCTAGTGAAGAAGGCGTCACAACTTCTTTATTTACAGTTCTGTCTGCGAAAACGTGCAATAATTGAAGATTTCCATGACAGGCAAGAACAGTTGAAAGAATGGCTCCAAAACTTGGGAATAGCAGATCAAACGGTAATAGAGCATGAAGATGAAGAACCTGATGATGGAGCTGTGCCTTTACTTCATGAAGACAGTGTTAAAAACAGATATGTTCCATCCGTTGCTGCTCTACCAATAATTCGTCCATCACTAGGAGGGCAGCAGTCAATTGCAGATAGAGCCAAAGTCGCAATGCAGGGTTATTTGAACCATTTTTTAGAAAACTTGGATATTGTGAATTCTCAAGAGGCGATGTTGCTAATTGATAGCATTACGTTTTATGTCTGCAGGTTTTTGGAAGTCTCCAAGCTATCCTTTATACAGGAGTATGGTCCAAAACTGAAAGAGGGATATGTAATGGTGAAGCATTTGTCAAATATTTCACAGGAGTTGGACGTATGGGCTGTTTTGAAACCTGGGTTTTTGGTCCTCTTGGATGATCCCTTCAGCAACAAACCACTCGATATAATTATTTTTGATATCCTCCCTTCCTCTGATGGAGCTGGAGGGACCAAAGCATATTTGGCTGATCCTATAAAAGGACGCAATCCTTTGCGTTATTCATTCAAGGTTACTAGTGGAAATAGGAGCATATTGTTGAGAACTACCAGTACTCCTAAAGTAAAAGCTTGGGTTGCTGCAATAAATGAATCTAGTCTGAGACCACTTGAAGGTTGGTGTTGCCCTCATCGCTTTGGTTCCTTTGCTCCCATAAGAGGCTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTTGATGGACATGCTGCATTTGAAGCTATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATCACGGGCTGGTGGCTATGCCCAGAGCTATATCTGAGGCGACCTTTTGATAGTTTTTCTACCTCTCGGTTAGATTCCTTACTAGAAGAAAAGGCTAAGCAAGGGGTTCAGATCTACGTGCTTCTCTACAAGGAGGTTTCTTTAGCTTTGAAAATCAACAGCTCATACAGTATGAGAAGACTGCTAAAAATTCATGAGAATGTGAAGGTATTGCGCTATCCAGATCATTTCGCTGCTCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGGTATGACACACCTGAACATAAAGTGGGTGACTGCCCTTCTGTAATATGGCCTGGAAAGGACTACTACAACCCAAGGGAATCTGAGCCAAATTCATGGGAAGACACCATGAGAGATGAATTGAATCGCAAGAAATATCCCCGTATGCCGTGGCATGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGACATTTTGTCCAACGTTGGAACCATGCTAAGAGAACCAAAGCTCCAAATGAACATGAAATTCCTCTACTCATGCCTCACCATCACATGGTCCTTCCTCATTACATGGGAAGAAGCAGAGAGATAGACATTGAAGAAAAGAAAGATGAAGACAAAAGGAAAGAAACTGTCCGGCAAAATTCATTTTCTTCAGAGTCTCCAGTGCAAGATATACCACTACTTTTACCGCAAGAAGCTGATGGAATTGTTACTTCAAATGGAGATCATACAAATTTTAGTGAAATTTCTCCATTGATGGAAGACGAAACTCTACTTTCAGACAATCAGACGAAAGGTTGTGAAGATGAAGTTGTTCCTTTACACTTGGGAGCACAATCTTTTGTCGATGTTCTAGATGATTGGTGGGAAGCACCAGAAGGCACCAATGATGACACAACTTTGGAGTATGGACAAGTTGGTCCACGCATCACCTGTCATTGCCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAGGTCAGCCCGAAGAAAGCATTCACACGGCATATTGTTCCCTTATTGAAAAAGCAAAACATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTATCAGGGGATGACACAATACAGAACCGTATTTTGGAAGCTTTATATAGGCGTATCTTGCAAGCTCACAAAGAACAGAAAGATTTTAGAGTTATAGTAGTGATTCCCCTCTTACCTGGCTTCCAGGGTGGTCTAGATGATGGTGGTGCTGCTACTGTGAGAGCCTTAACACATTGGCAGTATAGAACGATTTCTAGAGAAAAGCACTCGATACTATACAGTCTTGAAACTATACTTGGTCCTAAGAGTCGTGATTATATTTCTTTCTATGGTTTACGATCTCATGGTAGACTCTATGAAAATGGTCCTGTGGCTACAAGTCAGGTGTATGTGCACAGTAAATTGATGATAATTGATGATCGTGTATCTTTTATTGGATCATCTAATATAAATGACCGCAGTTTGCTTGGTTTAAGAGACTCTGAGATTGGAGTGCTTATAGAAGATAAAGAATATGTTGAGTCTTTGATGAATGGAAAGCCATGGAAGGCTGGAAAATTTTCCTATAGCCTCCGCTGCTCCTTATGGTCTGAGCACCTTGGTCTTCATAGCGGAGAGATCAGTAAAATCAGTGATCCGGTGGTAGATACAACCTACAAGGACTTGTGGTCAGCAACTGCAAAGGAAAATGCTAGTATATACCATGAGGTCTTTGCTTGCATTCCCAACGATGAAATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTTCAGTTGAAAGAAAAACTTGGTCATACCACCATAGATATGGGAATAGCCCCTGATAAGTTGGTCTGTCATGAGAATGGAGAAATCAAAACAATAGACCCGATAGATAGGTTGAAGTCTGTGAAGGGACACCTTGTTTCCTTTCCTTTGGAGTTCATGCGTGAGGAAGATCTAAGACCAGCTGTTATGGAGAGTGAGTTTTATGTTGCTCCTCAAGTCTATCATTGA 3228 0.4179 MSFEPLIPPSEALSTSYSFRRCGETVWIFDELPKATVVSVSRPDTGDISSILLSYTIQLQYKQAQTHILICFFLFNWRLVKKASQLLYLQFCLRKRAIIEDFHDRQEQLKEWLQNLGIADQTVIEHEDEEPDDGAVPLLHEDSVKNRYVPSVAALPIIRPSLGGQQSIADRAKVAMQGYLNHFLENLDIVNSQEAMLLIDSITFYVCRFLEVSKLSFIQEYGPKLKEGYVMVKHLSNISQELDVWAVLKPGFLVLLDDPFSNKPLDIIIFDILPSSDGAGGTKAYLADPIKGRNPLRYSFKVTSGNRSILLRTTSTPKVKAWVAAINESSLRPLEGWCCPHRFGSFAPIRGLTEDGSQAQWFVDGHAAFEAIATSIQDAKSEIFITGWWLCPELYLRRPFDSFSTSRLDSLLEEKAKQGVQIYVLLYKEVSLALKINSSYSMRRLLKIHENVKVLRYPDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMRDELNRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVLPHYMGRSREIDIEEKKDEDKRKETVRQNSFSSESPVQDIPLLLPQEADGIVTSNGDHTNFSEISPLMEDETLLSDNQTKGCEDEVVPLHLGAQSFVDVLDDWWEAPEGTNDDTTLEYGQVGPRITCHCQVIRSVSQWSAGTGQPEESIHTAYCSLIEKAKHFIYIENQFFISGLSGDDTIQNRILEALYRRILQAHKEQKDFRVIVVIPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILYSLETILGPKSRDYISFYGLRSHGRLYENGPVATSQVYVHSKLMIIDDRVSFIGSSNINDRSLLGLRDSEIGVLIEDKEYVESLMNGKPWKAGKFSYSLRCSLWSEHLGLHSGEISKISDPVVDTTYKDLWSATAKENASIYHEVFACIPNDEIHSRAALRQSMVQLKEKLGHTTIDMGIAPDKLVCHENGEIKTIDPIDRLKSVKGHLVSFPLEFMREEDLRPAVMESEFYVAPQVYH 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01421 1075 PANTHER PHOSPHOLIPASE D 198 1059 IPR015679 -
Vian3g01421 1075 Pfam Phospholipase D Active site motif 466 493 IPR001736 GO:0003824
Vian3g01421 1075 SUPERFAMILY Phospholipase D/nuclease 710 921 - -
Vian3g01421 1075 Pfam PLD-like domain 744 918 IPR025202 -
Vian3g01421 1075 FunFam Phospholipase 705 925 - -
Vian3g01421 1075 MobiDBLite consensus disorder prediction 604 618 - -
Vian3g01421 1075 CDD PLDc_vPLD1_2_yPLD_like_1 359 504 - -
Vian3g01421 1075 SUPERFAMILY PH domain-like 222 336 - -
Vian3g01421 1075 MobiDBLite consensus disorder prediction 604 633 - -
Vian3g01421 1075 CDD PLDc_vPLD1_2_yPLD_like_2 731 915 - -
Vian3g01421 1075 Gene3D Endonuclease Chain A 353 592 - -
Vian3g01421 1075 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 871 898 IPR001736 GO:0003824
Vian3g01421 1075 Gene3D - 220 335 IPR011993 -
Vian3g01421 1075 PIRSF PLD_euk 18 1075 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vian3g01421 1075 Gene3D Endonuclease Chain A 695 934 - -
Vian3g01421 1075 SMART pld_4 466 493 IPR001736 GO:0003824
Vian3g01421 1075 SMART pld_4 871 898 IPR001736 GO:0003824
Vian3g01421 1075 SMART PH_update 224 333 IPR001849 -
Vian3g01421 1075 SUPERFAMILY Phospholipase D/nuclease 320 586 - -
Vian3g01421 1075 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 466 493 IPR001736 GO:0003824
Vian3g01421 1075 ProSiteProfiles PH domain profile. 223 331 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01421 Vian-Chr3 15586320 15595465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01421 28 1075 Phospholipase D Gene Family (Wang group) AT3G05630 63.519 0.0 1363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01421 K01115 - gmx:100796914 1890.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01421 3 15586320 15595465 Vian3g01421 3 15586320 15595465 ECH