Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01414 ATGGGGATCGATCTGAAAGCCGGAGGTAAGAGCAAAAAGACGAAAAGAACAGCACCAAAGTCCAATGATATCTATCTCAAGCTTTTGGTTAAGCTTTATCGCTTCCTTGTCCGGAGAACTGGCAGCAATTTCAATGCTGTTATACTCAAGCGATTGTTCATGAGCAAGGTTAACAAGGCCCCACTTTCTTTGTCAAGGTTGATTAAGTATACCAAGGGAAAGGAAGATAGGATTGCTGTTGTGGTGGGGACTGTAACTGATGATATCCGTGTTTATGAAGTTCCACCCTTGAAAGTTACAGCACTCAGGTTTACAGAGACTGCTCGTGCAAGAATTGAAAAGGCTGGCGGTGAATGTTTAACATTTGATCAGTTGGCTCTTAGGGCACCTCTTGGACAGAACACGGTCCTTCTTAGAGGCCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCCTGCTCCTGGTGTTCCTCACAGCCACACCAAACCTTATGTTCGATCTAAGGGAAGGAAGTTCGAGAGGGCTAGAGGAAGGAGGAACAGCCGAGGATTTAGGGTGTGA 564 0.4592 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAPLSLSRLIKYTKGKEDRIAVVVGTVTDDIRVYEVPPLKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01414 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Vian3g01414 187 FunFam 60S ribosomal protein L18 1 187 - -
Vian3g01414 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vian3g01414 187 Gene3D - 1 187 - -
Vian3g01414 187 MobiDBLite consensus disorder prediction 151 187 - -
Vian3g01414 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Vian3g01414 187 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01414 Vian-Chr3 15535632 15537524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01414 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.032 3.63e-104 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01414 K02883 - gmx:100791657 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01414 3 15535632 15537524 Vian3g01414 3 15535632 15537524 ECH
Vian6g00825 6 25348479 25350188 Vian3g01414 3 15535632 15537524 PCT