Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01411 ATGAGTCGGGGAGGTGTAACTGCTTCGAAGGGCAAGAAGAAGGGGGTGACATTCACCATTGACTGTGCGAAGCCAGTGGAGGACAAGATCATGGATATTGCTTCTCTCGAGAAGTTCCTTCAAGAGAGGATTAAGGTTTCTGGCAAGGCCGGTGCTCTCGGTGACACCGTCGCCGTTGCACGCGAGAAGACCAAAATCATTGTTACTTCCGACAGCAACTTCTCTAAACGTTACCTCAAGTACTTAACTAAGAAGTATTTGAAGAAGCACAACGTTCGTGACTGGCTCCGAGTGATTGCTTCTAACAAAGATAGAAGCGTTTATGAACTGAGGTACTTCAACATTGCTGAGAATGAAGGAGAGGAAGAAGATTAG 375 0.464 MSRGGVTASKGKKKGVTFTIDCAKPVEDKIMDIASLEKFLQERIKVSGKAGALGDTVAVAREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01411 124 PANTHER 60S RIBOSOMAL PROTEIN L22 5 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vian3g01411 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vian3g01411 124 Gene3D - 6 124 IPR038526 -
Vian3g01411 124 FunFam 60S ribosomal protein L22-2 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01411 Vian-Chr3 15514719 15515299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01411 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 83.065 3.78e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01411 K02891 - gmx:100499952 220.32