Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01410 ATGGATTTAATGGAAGTAAAAAATCGGAAAGAAATTCATTCAATCTTCTTCTATCCCAAGTCGCAGACCAAACCAAACCAAAGACTTCAGATCTCAGATTACACCTCTTCCTTACTTTTCTCATCCTGTCCTAACTCGGACAACAAAAATTCAATCAAAAGCTCTTTCTTTTCTTCTCCCTGTTCTGATTTTAGGGTTTTTGTAATGGGTCTTGGTAACGACGAAGAGGAAGATAATAATAATAATACCAATAGTAACAAGGTCCATGATGAAAGAGATGGTGGATGTGGGAAGTCTTTCGCCTCAGTTTATTGTTCCATTTGTCTGGAGCCTGTTGCCGATAATGGGGATAGATCCTGGGCTAAGCTTCAATGTGGTCATCAATTTCATCTCGAGTTGAGTAACTCATTTTGTGGCTCACAGGCTGATTTAGGAGACTTTATGTTGGGTTCAATCTCTGAATTAGAAGCAAAGTTTACTGAAGCTGGGGGACCTTATGGCTTGCAGTACTTGCTGACCCTTTCAAGAAGCTCATATTGCATTGGTTCGGCATTCAACGTAAAAGGAGCAATGCAGTGCCCTAATTGTCGGAAGATTGAGAAAGGTCAATGGCTTTATGCTAATGGTAGCCGGTCATATCCAGAGTTTAGTATGGATGAGTGGACGCATGACGAGGACCTTTATGATCTTAGTTACTCTGAGATGTCTTTTGGAGTTCATTGGTGCCCTTTTGGCAACCTGGCACGACTTCCATCATCTTTCGAGGAAGGGGAGTTTTCATCATCTGCATATCATGATGTAATTGGACAACATGCTATATTTGCTGAACATACAGCTGTGTCATCTGCCAGTCATCCTTGCCCGTATATTGCTTACTTTGGACCAATACATCCATCCTCCTCCAACTCAGGTGGAACTGTATCAGAGGCTTCAAACTTCAACCATTGGAATGGTTCATCTGTGCCCAGTGACATACCAACTTCATACTCATTTCCTGCCGTGGATCTTCACTATCACAGCTGGGAACACCACTCCCCTCCTTTTTCGACAGCAACTACTCGTCTAGTTGCCGCTGATCAGCCATCAGGATCCCCTGGTAGTCAAAGGCCAGTCAGGGGTGGTTCGGATGTACCAAGATCAGGATCTTTCATGCATCCCTTCCTTGTCGGTCACAGTTCTGCTGCCAGAGCGGGGAGCTCAGTTTCTTCCTCAATGATCCCTCCTTATCCTGGTAGCAATGCCCGGGCTCGGGATAGAGTTCAGGCTCTTCAGGCATACTACCAACCACAGCAACCTCCTAACTCAACCACAATGCGGACACCTATCACTACTGGCTCCCGACGATCCAGCAGTCACAGTGGATCAGCTCAATTAGCACCAATAGCCACATCGCCAGACCAAAGTGGTGGCTTTTTTCTTATCCCATCAAGTTCATCAGGGCGCAATTTTCAAGAAGAAAACCATCTACCAAATCACTTCCACGCTTGGGAAAGAGACCACTTGCCTTCATTGTCATTGAGCCATGTTGATAGAGATGCAGGTTGGAGAGCATACCACCAGTCCAGCAGCAGGTCAGACCCCGGTGCCAGGTCCAGTAGCTTCCGTTTAAGGCACGGATCAGATAGAATGCCTTCACAAAATCGACTATATACTCTGGCTGGCCTTGGAATTGATTTTTCCAACAGCCACCGGTGTGATGGACATTTGCTTCCTCTTAGTTTATTTGCCTCCGTGGGCATACAATAA 1746 0.4542 MDLMEVKNRKEIHSIFFYPKSQTKPNQRLQISDYTSSLLFSSCPNSDNKNSIKSSFFSSPCSDFRVFVMGLGNDEEEDNNNNTNSNKVHDERDGGCGKSFASVYCSICLEPVADNGDRSWAKLQCGHQFHLELSNSFCGSQADLGDFMLGSISELEAKFTEAGGPYGLQYLLTLSRSSYCIGSAFNVKGAMQCPNCRKIEKGQWLYANGSRSYPEFSMDEWTHDEDLYDLSYSEMSFGVHWCPFGNLARLPSSFEEGEFSSSAYHDVIGQHAIFAEHTAVSSASHPCPYIAYFGPIHPSSSNSGGTVSEASNFNHWNGSSVPSDIPTSYSFPAVDLHYHSWEHHSPPFSTATTRLVAADQPSGSPGSQRPVRGGSDVPRSGSFMHPFLVGHSSAARAGSSVSSSMIPPYPGSNARARDRVQALQAYYQPQQPPNSTTMRTPITTGSRRSSSHSGSAQLAPIATSPDQSGGFFLIPSSSSGRNFQEENHLPNHFHAWERDHLPSLSLSHVDRDAGWRAYHQSSSRSDPGARSSSFRLRHGSDRMPSQNRLYTLAGLGIDFSNSHRCDGHLLPLSLFASVGIQ 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01410 581 CDD RING-H2 105 132 - -
Vian3g01410 581 MobiDBLite consensus disorder prediction 356 385 - -
Vian3g01410 581 SUPERFAMILY RING/U-box 104 131 - -
Vian3g01410 581 MobiDBLite consensus disorder prediction 426 469 - -
Vian3g01410 581 PANTHER OS09G0511500 PROTEIN 94 539 IPR044274 GO:0004842
Vian3g01410 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 202 IPR013083 -
Vian3g01410 581 MobiDBLite consensus disorder prediction 518 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01410 Vian-Chr3 15482029 15493539 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01410 - - var:108326331 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01410 3 15482029 15493539 Vian3g01410 3 15482029 15493539 ECH
Vian6g00828 6 25373351 25381345 Vian3g01410 3 15482029 15493539 PCT