Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01402 ATGGCTTCTGCTTCTGACCATTTTCCTATCATCTTCATCATCACCCTTTTCGTGCTCCTGTCATCACACATTTTTACTGTGGCGGATTCTCTGTTCAATGCAGTCGGAAGCTTCCAACTTCATGGCCTACCAGATATTCATTTCATTGAAGAGAATGATGAAAAGCAGATTGAGAAAATCTCAGGACTGGATGAGAATGAAAAGAAGCAAGCTTTCATAGTGGACAAGTTTAGATCCTTGCTTGGACTAAAGACTTTCCACACCAAAGTACCATCCAATGGTGATTTCGAGTTTCTCTCTCCCTCACCTTCTCCATCTCCCCTCATTGAAGAAGCTCAGGCTTCGGCCCCTTCTCCTTCTCCACTTCCACACGTGCACTCTCATTCCCATCATCCACGGCACCGTAAGAATCCTCCGCTTCACCAAACTCATCATGAAGATAGAGGCAGGGCCAAAAGAATACTAATAGCTGTTCTTGTATCTGCTGGTGTTGCTACATTGATTGGTGCTTGTGGTTTATTCTTGTGGTGGAGGAAATTCTCAAGTCACAAAAAGAAACCCAAAAGGACAATGCCACTCTGTAGCAAGAGCAAGGGAAGTGGAGGTTCTTATCGAAGTTCATCAGGCAAGGTGAGTTTAAACTCTGGACTAGATCTGTTTTATCTTAATGCTTTAGGCGAGGACGTTGAGCAACATGGTTGCACCTTGAAAAAAACTTGCAAGGATGGTATACACTATGATAATGTTAGCGGTTCTTCCACCAAGGAAATTGCATCTGTTCATGAAGATGCAGACTCAGAAAAGGGTGAAGCTGAATCTGATGGCGGCAACTCTTCTGGGGATAAGATCATGCCTGAAGATTGTCATTCTTCAGACGATGAAAGTTTCCATTCCTTCGTTGATTCTCATTCCAATAATAGACTTTCCAATGCTTCAGCTTGTAATCTTAGTGACACAAACTCTCTGTCACGTCAAAATTCAAGTTCATTACTGAACCAATTTCTTCGCTCTCCACCACACAACTCAATCCCAAATACACAATCTCACCAACCATCAAGTAGTACAAAACATGAGGAGCAAGAGACTGAGACCACTCACCAATGTTCAAAAACATTTACTCCCCCTCCACCACCACCACCACCACCACCACCTCCTCCTCCAACTCCTCCTCCACCATTGCAAATGCCATTGTTTTCTTTGCATTCTCTCACTTCTTCCTCTAGAGTCTCTTCTCATTCCCTACTTTCTTTGACATCTAATAATTTATCATCTCCGGTAAATTCAGACACTTTCTCAGGTTCAAATCAAAGTCCAGAAAAGGAGTTGCCTTCCACACCTGAACCTTACCCTACACATTCTCCTCCCAACATCCCCCCACCACCATGCCCACCTCCATTTCTCAAAGGCAATAGTAACAATACCAAAACCCCACCTCCTCCACCATCTCAACTCCCCCAATTCACCCCACTTGGTAAAGATGGCGCACCATTGCCAAAACTAAAACCACTTCACTGGGACAAAGTAAGAGCCGCACCAAATCGCACAATGGTTTGGGATAAACTGCGATCGAGCTCATTCGAGTTGGATGAGGAAATGATCGAGTCTCTTTTTGGTTACAACTTGCAAAATTCAATTAAGAACGACGAAACAAAGAGTAAAACCCCGTCACCAGGCAAGCACGTACTTGAGCCAAAACGCCTGCAGAACATAACTATACTGTCAAAAGCTCTGAATGCGACAGCAGAGCATGTCTGCGAGGCCTTAATGCAAGGGAAGGGGCTGTCTTTACCCCAACTAGAGGCACTAGTGAAGATGGTACCCACCAAGGAAGAAGAATCCAAGCTCTTCAATTATAAAGGTGACATCAATGAATTGGGGTCCGCCGAAAGGTTCGTGAGAGCAATGCTTGATGTGCCATATGCCTTTCAAAGAGTAGAAGGCATGCTTTTCAGAGAGACGTTTGACGATGAAGTAGTTCACCTCAGGAACTCATTTTCAATGCTTGAGGAAGCATGCAAGGAACTTCGATCAAGCAGGTTATTCTTGAAGCTACTAGAAGCAGTGCTCAAAACAGGAAACCGTATGAACGTTGGAACAATCAGAGGAGGTGCTAGAGCATTTAAACTAGATGCCCTTCTCAAGCTTGCAGATGTTAAGGGAACTGATGGGAAAACCACGTTGCTCCATTTCGTTGTTCAGGAGATTGTTCGTTCGGAAGGAATAAGAGTTTCAGATAGCATTATGGGAAAAATCAGCCAGAGAAGTAAGAACAGAACGGAGGAAGAGAAGGAAGAAGATTACAAAAGAATGGGATTAGAACTTGTTTCTGGACTCAGCACTGAGTTATACAACGTGAAGAAAACAGCCACAATAGACTTGGATGTTCTTGCAAGCTCTGTGTCGAATCTATCAGAAGGTATGAAAAAGCTGCAACATATAGTGGAAAAGGAACTGCATAAAGATGAGAGAAGCATTAACTTTGTACAGTGTATGAAGTCATTTCTGAACTATGCTGATGCAAACTTGAAAGAGTTACGAGGAGATGAAAATAAAGTATTGGTACGTGTGAAAGAAATCACGGAATATTTTCATGGGGATGTGAGCAAAGAAGATGCAAATCCTTTGAGGATATTTGTGATTGTTAGAGATTTTCTGGGGATGTTAGATAATGTGTGTAAAGAACTTAGAAAGTCTAAAGCTCCACGTAGTCCAAATCCTCTTGCTATGCTCCCTTTAGATAGATCATAG 2748 0.429 MASASDHFPIIFIITLFVLLSSHIFTVADSLFNAVGSFQLHGLPDIHFIEENDEKQIEKISGLDENEKKQAFIVDKFRSLLGLKTFHTKVPSNGDFEFLSPSPSPSPLIEEAQASAPSPSPLPHVHSHSHHPRHRKNPPLHQTHHEDRGRAKRILIAVLVSAGVATLIGACGLFLWWRKFSSHKKKPKRTMPLCSKSKGSGGSYRSSSGKVSLNSGLDLFYLNALGEDVEQHGCTLKKTCKDGIHYDNVSGSSTKEIASVHEDADSEKGEAESDGGNSSGDKIMPEDCHSSDDESFHSFVDSHSNNRLSNASACNLSDTNSLSRQNSSSLLNQFLRSPPHNSIPNTQSHQPSSSTKHEEQETETTHQCSKTFTPPPPPPPPPPPPPPTPPPPLQMPLFSLHSLTSSSRVSSHSLLSLTSNNLSSPVNSDTFSGSNQSPEKELPSTPEPYPTHSPPNIPPPPCPPPFLKGNSNNTKTPPPPPSQLPQFTPLGKDGAPLPKLKPLHWDKVRAAPNRTMVWDKLRSSSFELDEEMIESLFGYNLQNSIKNDETKSKTPSPGKHVLEPKRLQNITILSKALNATAEHVCEALMQGKGLSLPQLEALVKMVPTKEEESKLFNYKGDINELGSAERFVRAMLDVPYAFQRVEGMLFRETFDDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQRSKNRTEEEKEEDYKRMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLSEGMKKLQHIVEKELHKDERSINFVQCMKSFLNYADANLKELRGDENKVLVRVKEITEYFHGDVSKEDANPLRIFVIVRDFLGMLDNVCKELRKSKAPRSPNPLAMLPLDRS 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01402 915 Pfam Formin Homology 2 Domain 494 888 IPR015425 -
Vian3g01402 915 MobiDBLite consensus disorder prediction 332 398 - -
Vian3g01402 915 SUPERFAMILY Formin homology 2 domain (FH2 domain) 503 899 - -
Vian3g01402 915 SMART it6_source 490 903 IPR015425 -
Vian3g01402 915 MobiDBLite consensus disorder prediction 258 275 - -
Vian3g01402 915 MobiDBLite consensus disorder prediction 332 353 - -
Vian3g01402 915 PANTHER FORMIN-RELATED 406 900 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vian3g01402 915 MobiDBLite consensus disorder prediction 371 396 - -
Vian3g01402 915 MobiDBLite consensus disorder prediction 418 442 - -
Vian3g01402 915 ProSiteProfiles Formin homology-2 (FH2) domain profile. 490 914 IPR015425 -
Vian3g01402 915 PRINTS Proline rich extensin signature 478 494 - -
Vian3g01402 915 PRINTS Proline rich extensin signature 382 398 - -
Vian3g01402 915 PRINTS Proline rich extensin signature 368 380 - -
Vian3g01402 915 PRINTS Proline rich extensin signature 443 464 - -
Vian3g01402 915 MobiDBLite consensus disorder prediction 107 147 - -
Vian3g01402 915 MobiDBLite consensus disorder prediction 443 467 - -
Vian3g01402 915 MobiDBLite consensus disorder prediction 285 300 - -
Vian3g01402 915 Gene3D Formin, FH2 domain 513 904 IPR042201 -
Vian3g01402 915 MobiDBLite consensus disorder prediction 187 208 - -
Vian3g01402 915 MobiDBLite consensus disorder prediction 418 501 - -
Vian3g01402 915 MobiDBLite consensus disorder prediction 258 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01402 Vian-Chr3 15409191 15412604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01402 475 908 FH2 protein (formin) Gene Family AT3G05470 74.828 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01402 - - gmx:100793761 1318.91