Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01401 ATGAACTTAGCAATGGAGTGGAATGTAAAGAGGAAAGAGTTTCCATGTAAAGGGAAAAAACATATTGAGAAGTTTGAAGAAAAGGATGCGGTATTACATGTTGTAGGGAAAACTTTGATGAGGTGTATCCCTGGGTTGGTCCTGTTGTTACAAGGTTGTAGTTCTTTCATTCAAAGGTGTAAAAATTGGACCTTTGTAAGACGGTGTCGTTTAGTATGTGTGTTTTTGAATTGCGAGATTGGGAATGCATTTATTAAATCTCATCGTAACATTTACCGTCCTCCAGAAGAATTGGCGGGATTGAGTGCAGCATCACTTTCATCTCAGTATTCGAGCATAGTCGAAGCCATTAAAGTAGTGGGGAATGCTCTCAAAAAACGACCTTTGCGCAAGTGTTTAGTTCGACAATCCAATATATTCGACCATTTTCATTCCAATGACGATGTGAAAGAACACAAGAAGGAACTCCCTCAATTGGGAATTAAACCCAATCCCATTGTGCTTTCAGAGCCTTTTGAAGCGCAAGATTTGGATGTTGAGTCTGATTGGGAGCAGAAGATTAGTAATATGATGAAAAAGCATTTTGGTTTTTCATCCTTGAAGAGTTTTCAGAAGGAAGCCATCTCTGCCTGGGTTGCTCACAAAGACTGTCTTGTCCTCGCTGCAACAGGATCCGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTGTCTGGGAAAGTGGTGGTTGTGATTTCGCCCTTGATAAGCCTCATGCATGACCAGTGTTTAAAGCTTACTGGACATGGGATCAGTGCGTGCTTTCTTGGCTCCGGGCAACCAGATAATACCGTTGAACAGAAAGCAATGAGAGGATTGTATAGTATAGTGTATATTTGCCCAGAGACTGTTCTAAGATTGATTCAACCACTGCAGAAGCTTGCAGAAAGTCGTGGCATTGCTTTATTTGCAATTGACGAGGTACACTGTGTTTCGAAATGGGGTCATGATTTTCGTCCAGATTACAGGCGACTGTCTGTGCTGAGAGAAAATTTCAGTACAAGCAAGCTAAAATCTCTAAAATTTGATATACCTCTGATGGCCTTAACAGCTACAGCTACAAAAAGAGTACGAGAAGACATTTTAAAATCATTGCAAATGTCAAAAGAAACGAAAGTTTGCCTTACATCATTTTTTAGACCTAACTTACGATTCATGGTAAAACATAGTCGAGTATCACAGGCTTCTTATGCAAAAGATTTTCATGAATTGATTCATGTATATGGTAGAAAGAAAAATATTGATGAAAATGAAAAGGTTTTCATCTCAGATGATTCAGATCAGTTTTCTAATAGTTCCGATGCTAGTAGTATCTCTGATACAGACAGTGTTTCACCTGATGACATGGATGACAACCAAGATGATTATGCTTATAGAGATATTAATATAATGCACTCAGGAAACTCTGATGACTTTTTAACTGGAAAAGAACTGTCAATTGAATTCCTGGAGAATGATATCGATGCCTTTCAAAGTGTGGATAACTTAGATGTTGCCCGTGGTGACTTCTGCGTGCTACCTCACAAGGAATTGGAATTATCCAAGAACACCAACACACCTAAGAAACCAGAAAGAAGAGTAAAAATTCATAATGAGCCTTTGGAACAAGGACCAACAATCATATATGTACCCACCAGAAAAGAAACTCTGAGAATTGCGAAGTACCTATGCAAGTTTGGTGTGAAGGCAGCTGCTTATAATGCAGGGCTTCCCAAATTGCATCTAAGAAAGGTTCATAAAGAGTTTCACGAAAATAGTTTAGAGGTTATTGTTGCTACAATAGCTTTTGGAATGGGTATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCATACTACCAAGAAGCTGGACGAGCTGGTCGAGATGGAAAATTATCAGATTGCATTCTGTATGCAAATCTAGCAAGCAAGCCGTCACTTTTGCCTAGTCGAAAAAGTGAAGATCAGAAAAAACAAGCATATATTATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGCTGTCGACCAAAGATTCTCGTTGAATACTTTGGAGAGGATTTCAGTCATCAGAAATGTCACTTATGTGATGTGTGCATTGATGGTCCACCTAAAAAGCAGAATCTAAAAGAGGAGGCCTGTATTTTTCTGCAAACTATAGGTGCCCAAAATGGGCGTAGGGATTCCAAGGATTACTCATATGACGATGATATACATTTTGACTACAATTACAGAGGACAAAGAGAGAGGCCGAATCTTAGGATCTTGGTTGGAAAAATAAGGCAGCAGTTTCAAAAGTTTTCAACCACTGACATGTTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGAGAAGGAGATGACAAGGTATACTTAATTGCTTTACCCAGAAATAACTTCTCTAAACTCCAACGTGCAAAATTCCCGGAATTTGTGAGGTCCATGAATGAGGACGCTTTCTGGGTTTACCCTGAAGCAGATATGTTGCTTGCAAGAAAATTAACTGAGAAACCATTTTCCTCATTCTCAGAATGGGGAAAGGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTAGAAAGAATGGGAGTGAAGAGAAAGTCAGGGATGGTGTCAAGCTCCAAAAGGAAACGAAAGAGAAAAGTGCAACATGATTTGAGAACTTCTCGTGGCAGACTAACAGCAAAACTCTCAAAATATAAGTGA 2769 0.3947 MNLAMEWNVKRKEFPCKGKKHIEKFEEKDAVLHVVGKTLMRCIPGLVLLLQGCSSFIQRCKNWTFVRRCRLVCVFLNCEIGNAFIKSHRNIYRPPEELAGLSAASLSSQYSSIVEAIKVVGNALKKRPLRKCLVRQSNIFDHFHSNDDVKEHKKELPQLGIKPNPIVLSEPFEAQDLDVESDWEQKISNMMKKHFGFSSLKSFQKEAISAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLTGHGISACFLGSGQPDNTVEQKAMRGLYSIVYICPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSTSKLKSLKFDIPLMALTATATKRVREDILKSLQMSKETKVCLTSFFRPNLRFMVKHSRVSQASYAKDFHELIHVYGRKKNIDENEKVFISDDSDQFSNSSDASSISDTDSVSPDDMDDNQDDYAYRDINIMHSGNSDDFLTGKELSIEFLENDIDAFQSVDNLDVARGDFCVLPHKELELSKNTNTPKKPERRVKIHNEPLEQGPTIIYVPTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRKVHKEFHENSLEVIVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLSDCILYANLASKPSLLPSRKSEDQKKQAYIMLSDCFRYGMNTSCCRPKILVEYFGEDFSHQKCHLCDVCIDGPPKKQNLKEEACIFLQTIGAQNGRRDSKDYSYDDDIHFDYNYRGQRERPNLRILVGKIRQQFQKFSTTDMLWWRGLARILEVKGYIREGDDKVYLIALPRNNFSKLQRAKFPEFVRSMNEDAFWVYPEADMLLARKLTEKPFSSFSEWGKGWADPEIRRQRLERMGVKRKSGMVSSSKRKRKRKVQHDLRTSRGRLTAKLSKYK 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01401 922 SMART helicmild6 563 644 IPR001650 -
Vian3g01401 922 MobiDBLite consensus disorder prediction 438 456 - -
Vian3g01401 922 Pfam DEAD/DEAH box helicase 203 370 IPR011545 GO:0003676|GO:0005524
Vian3g01401 922 FunFam ATP-dependent DNA helicase 525 653 - -
Vian3g01401 922 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 697 IPR001650 -
Vian3g01401 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 655 IPR027417 -
Vian3g01401 922 Pfam Helicase conserved C-terminal domain 542 643 IPR001650 -
Vian3g01401 922 Gene3D - 521 653 IPR027417 -
Vian3g01401 922 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 384 IPR014001 -
Vian3g01401 922 Pfam RecQ zinc-binding 665 715 IPR032284 -
Vian3g01401 922 FunFam ATP-dependent DNA helicase 169 392 - -
Vian3g01401 922 PANTHER DNA HELICASE RECQ FAMILY MEMBER 178 812 - -
Vian3g01401 922 NCBIfam RecQ family ATP-dependent DNA helicase 190 419 IPR004589 GO:0004386|GO:0006310
Vian3g01401 922 Gene3D - 656 829 IPR036388 -
Vian3g01401 922 Gene3D - 169 392 IPR027417 -
Vian3g01401 922 MobiDBLite consensus disorder prediction 438 465 - -
Vian3g01401 922 FunFam ATP-dependent DNA helicase 655 824 - -
Vian3g01401 922 CDD DEXHc_RecQ 191 391 - -
Vian3g01401 922 SMART ultradead3 196 401 IPR014001 -
Vian3g01401 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 254 IPR027417 -
Vian3g01401 922 MobiDBLite consensus disorder prediction 882 922 - -
Vian3g01401 922 MobiDBLite consensus disorder prediction 891 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01401 Vian-Chr3 15398308 15406745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01401 545 662 Eukaryotic Initiation Factors Gene Family AT5G11170 27.119 1.32e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01401 K10900 - gmx:100793222 1233.39