Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01398 ATGGCGGAAACCAAGTTGAAAGAAACCGTTCACGAAGAACAAGAAAAAGAAGAAGAAGCAGATAACCAAAGCTTCGAAGAACTCGGCTTGGACGCTCGCCTCCTTCGCGCCTTACAAAAGAAAGAGATAGAGAAACCCACTCCAATTCAGGCCGTCGCGATTCCACTAATTCTGGAAGGTAAGGACGTGGTTGCACGCGCCAAAACAGGTTCCGGAAAGACCTTAGCGTATCTTCTCCCGTTGCTTCAGAAACTGTTTATCGTTAGTGCTGATCGGAAGAAGCTAGCGCCCAATGCTTTTGTTCTTGTCCCTACTCGCGAATTGTGTCAACAGGTGTATGCGGAAGTGTTGTCGCTGGTTGAGTTATGCAGAGTTCAACTGAAAGTTGTGCAGCTGAATAGCAACATGCTTGCTAATGACTTGAGGGCAGCATTGGCCGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGCGTAGCGAAGTGTTTGTCCGGTGGCATACTTAAGGCGGCATCCATTAACGAATCCCTTGAAACTCTTGTTCTTGATGAGGCCGATCTTCTTCTATCATATGGGTATGAAAATGATATAAAAGCTTTTACACCTCATGTTCCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCGGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCATTTATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGAGATCATTCCTAAAAGTGTTCAGCAGTTTTGGATCTCATGTTCTACCAGTGACAAGTTACTTTACATCCTTGCTGTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTCCTTATATTTACAAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCCCGTCTCCATATTCTGGAGGAATTCAATGCGGGCCTATTTGATTATCTAATTGCAACAGATCTTAGTCAGTCAAAGGAAAAGGATGAAGTGTCTAAGGAAAGTAATGTTGTATCACGGAAGTCTAGAAAACGTGCTAAAGTAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAGTTGACTTTAAAAATGTATTCACGGTTATAAACTTTGAAATGCCTCAAAATGTTGAGGGATATGTTCATCGAATTGGACGAACAGGAAGAGCATACAATTCTGGTACTTCTGTCTCTCTGGTTTCTCCGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGAGATGACGAAAACAAAGGCACAAGTTCTATTGCCGAGTTTCCCCTTCTCACCAAGAATGCCGTTGAATCTCTACGGTATAGAGCTGAGGATGTTGCCAAGAGTGTAACCAGAATTGCAGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCATTTTGAGACTAATCCAAGAGACCTAGATCTACTGAAGCACGACAAAGTTTTGAGCAAGAATGCTCCACCTCCGCACCTGCGTGATGTGCCTGACTACCTATTAGACAAACAAACGAAAGAGGCAAGGGAAATGGTCAAACTTGCGAGGGATGCAATGGGAAATAATAATCGCCGCAAAGGATCCAAGAGAAAATTAAGAAAAGATGGAGACCCTCTGAAGGCTATCTCCGCTCTGGCATCAAAAAGACCGCGCAAAAAGAAGACTGATCAGAAGACTGGTGGAAGCGATGGCAACGATGGCAGTGATAGACATAAACGCAAAAAGAACAAGGGTTTATGA 1815 0.4253 MAETKLKETVHEEQEKEEEADNQSFEELGLDARLLRALQKKEIEKPTPIQAVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFIVSADRKKLAPNAFVLVPTRELCQQVYAEVLSLVELCRVQLKVVQLNSNMLANDLRAALAGPPDILISTPACVAKCLSGGILKAASINESLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNNKDEIIPKSVQQFWISCSTSDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVSKESNVVSRKSRKRAKVKLDSEFGVVRGVDFKNVFTVINFEMPQNVEGYVHRIGRTGRAYNSGTSVSLVSPDEMDTLEEIRSFVGDDENKGTSSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPPHLRDVPDYLLDKQTKEAREMVKLARDAMGNNNRRKGSKRKLRKDGDPLKAISALASKRPRKKKTDQKTGGSDGNDGSDRHKRKKNKGL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01398 604 Gene3D - 240 445 IPR027417 -
Vian3g01398 604 Pfam DEAD/DEAH box helicase 47 224 IPR011545 GO:0003676|GO:0005524
Vian3g01398 604 PANTHER RNA HELICASE 11 547 - -
Vian3g01398 604 SMART helicmild6 292 406 IPR001650 -
Vian3g01398 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 430 IPR027417 -
Vian3g01398 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 23 51 IPR014014 GO:0003724
Vian3g01398 604 MobiDBLite consensus disorder prediction 581 598 - -
Vian3g01398 604 Pfam Helicase conserved C-terminal domain 263 406 IPR001650 -
Vian3g01398 604 CDD SF2_C_DEAD 252 415 - -
Vian3g01398 604 MobiDBLite consensus disorder prediction 1 24 - -
Vian3g01398 604 Coils Coil 3 23 - -
Vian3g01398 604 MobiDBLite consensus disorder prediction 540 604 - -
Vian3g01398 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 236 IPR027417 -
Vian3g01398 604 Coils Coil 476 496 - -
Vian3g01398 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 270 452 IPR001650 -
Vian3g01398 604 SMART ultradead3 42 255 IPR014001 -
Vian3g01398 604 MobiDBLite consensus disorder prediction 1 18 - -
Vian3g01398 604 CDD DEADc_DDX56 30 237 - -
Vian3g01398 604 Gene3D - 1 237 IPR027417 -
Vian3g01398 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 235 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01398 Vian-Chr3 15365344 15372609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01398 24 446 Eukaryotic Initiation Factors Gene Family AT3G19760 25.532 1.25e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01398 K14810 - gmx:100800749 1009.59