Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01397 ATGGATCACGCGCGATCGACCAACGGCGAGGACAATGCGGCGGGAATTCCGGACGACTTACGGTGCAAGAGGTCCGACGGAAAGCAGTGGCGGTGCACGGCCATGTCGATGCCTGATAAGACGGTGTGCGAGAAGCACTACATCCAGGCTAAGAAGCGCGCCGCGAATTCCGCAATGAGGGCCAACCTCAAGAAAGCCAAGAGGAAGTCGCAGTCGCTGAACGAGTCTGATGTTTATTTGGAGAGTAAGAGCGACGATTTCGACGTTCCTCTCTCTGCTATAAGCCTTTCGCAGAAGAAGCTCTCGAAGAATCAGTTTCGTTACACGCCCGAGCGTGACGCTCGAAGAGCCTCCTCTGCGAGACATGCTCATGACGAGGTGGATGTGGATGTGGATGTGGATGCTGATGCTGATGCTGATGCAGATGCAGATGTGGATGTGGATGTGGATGCGGATGCTGATGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCTCCTATGATTCCCCGCCGGACTCCTCGCGCAAGAGATCGCGAAGGAGCTTGGATGCTAATGCCACCACTCAGGAATATTCCGACGGAACCTCTGGTTCTTCTGAAGACACCGGCGGGCAGACTTGTCATCAGTGCCGGAGGAATGACAGAGATAGAGTTACGTGGTGCTTAAAATGTGACCGGAGGGGATACTGTGATAGCTGTATATCAGCATGGTACTCGGACATTTCGTTGGATGATGTACAGAGGATATGTCCTGCTTGCCGCGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCTATCAAGGTTCGTATACGCGAGACACCTGTTCTGGATAAGTTACAGTATCTCCATGTGTTGCTATCTTCGGTGCTTCCGGTGGTAAAACAGATCCATCGTGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGAATAAAATTCAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATAACTGATTATCATCGACGCTGTCCAAATTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCACAATAAAGAACCTCAGACAGAGCTAGCTAAAACTTGTGATCAAAATATATTAAGTAAATTTCCCCATTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGCTGTGGTCATTCTTCATTAAACTTAAGCCGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTGATGCCGATGGTCCACCAGAAACTGGGCTGAATGATCTCAGACTGTGCCAGTGTTCTCATAGAGAAGCCAGTGATGATAATTATCTTTTTTGTCCAGCATCTGACGATATCAAAACTGATGGGATTGGAAAATTTAGAAAGCATTGGAAAACTGGTGAGCCCATTATTGTTAAGAAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGGGGGGTTCAAGAGACAACAGATGAAAAAGCAAAAGATGAAAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATCGAGCTTGCTCAGTTCATGAAAGGATACTTCGAAGGGCGTGCTCATGAAAATGGTTGGCCACAGTTATTAAAATTGAAGGATTGGCCTTCACCTAGCGCATCTGAAGAATTTCTCTTGTATCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATAGCTTATGGAATTAGCGATGAACTTGGAAGAGGTGATTCAGTGACAAATCTCCACTTCAATATTCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGTTAAAGGATTGGCAGAGAACTAAAATTGAAATTATGCAAAAGGATAAAGCTGATGAGGAATCTGAGGCGAAAGAGTCACATGGAGATCCTCAAATATTTTCAAGCGGGAGTTCACTTGATTCATCACTTGGTACAAAAAGTAGTGGACTTGACATGGATTCAAACCAGAATAAGTCAATTATGGATCAAGAATTTGAAATTTATTCTAGTGCTGAAGGTGATATGGTCAATTGTAAGGTCCTGTCTACACAAAATGGAGATGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAATATTGACTAAATATTTGAAAATACATTGGAAGGAATTGGGGAAGTCAGATGATGTGGGAAATGAATTTGTTGCATGGCCTCTATATGATGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCGAATGTTCAGCTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGCGATGCTGTACGATTGACAGAGGAAATTCGCTGTCTACCGATTGAACATGAATCAAAAGTTCAAGTATTGGAGGTGGGGAAGATATCTCTCTACGCAGCAAGTTCTGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCAAAAACTTGGCGCCGAGATTGGATATGGAGACCCTAATTTGACAGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2844 0.4381 MDHARSTNGEDNAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLNESDVYLESKSDDFDVPLSAISLSQKKLSKNQFRYTPERDARRASSARHAHDEVDVDVDVDADADADADADVDVDVDADADADVALYEEDNWVSYDSPPDSSRKRSRRSLDANATTQEYSDGTSGSSEDTGGQTCHQCRRNDRDRVTWCLKCDRRGYCDSCISAWYSDISLDDVQRICPACRGICNCKTCLRSDNSIKVRIRETPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRIKFNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLNCCRDLREATADHNKEPQTELAKTCDQNILSKFPHWRSNDNGSIPCPPKEYGGCGHSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISDADGPPETGLNDLRLCQCSHREASDDNYLFCPASDDIKTDGIGKFRKHWKTGEPIIVKKVFDGSSISSWDPMVIWRGVQETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYFEGRAHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYIAYGISDELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKDWQRTKIEIMQKDKADEESEAKESHGDPQIFSSGSSLDSSLGTKSSGLDMDSNQNKSIMDQEFEIYSSAEGDMVNCKVLSTQNGDVSEKTHPGVLWDVFRRQDVPILTKYLKIHWKELGKSDDVGNEFVAWPLYDGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEIRCLPIEHESKVQVLEVGKISLYAASSAIKEVQKLVLDQKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01397 947 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 912 IPR045109 GO:0032454|GO:0033169
Vian3g01397 947 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Vian3g01397 947 MobiDBLite consensus disorder prediction 1 20 - -
Vian3g01397 947 ProSiteProfiles JmjC domain profile. 581 877 IPR003347 -
Vian3g01397 947 Gene3D Cupin 469 886 - -
Vian3g01397 947 MobiDBLite consensus disorder prediction 54 75 - -
Vian3g01397 947 Pfam WRC 17 57 IPR014977 -
Vian3g01397 947 Coils Coil 56 76 - -
Vian3g01397 947 MobiDBLite consensus disorder prediction 696 723 - -
Vian3g01397 947 MobiDBLite consensus disorder prediction 185 207 - -
Vian3g01397 947 MobiDBLite consensus disorder prediction 163 208 - -
Vian3g01397 947 FunFam lysine-specific demethylase JMJ25 isoform X1 470 709 - -
Vian3g01397 947 SUPERFAMILY Clavaminate synthase-like 490 886 - -
Vian3g01397 947 ProSiteProfiles Zinc finger RING-type profile. 208 255 IPR001841 -
Vian3g01397 947 MobiDBLite consensus disorder prediction 105 129 - -
Vian3g01397 947 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 203 269 IPR018866 -
Vian3g01397 947 Pfam JmjC domain, hydroxylase 805 856 IPR003347 -
Vian3g01397 947 SMART cupin_9 588 877 IPR003347 -
Vian3g01397 947 MobiDBLite consensus disorder prediction 105 132 - -
Vian3g01397 947 MobiDBLite consensus disorder prediction 683 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01397 Vian-Chr3 15352425 15358595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01397 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.30e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian3g01397 JmjC 9.8e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01397 K15601 - gmx:100801287 1653.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01397 3 15352425 15358595 Vian3g01397 3 15352425 15358595 ECH