Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01395 ATGTCAAACATCACAAGCTGTGATAGTGGGAGCTTCTCTACAGAAAATACCAGAGAAGATGCAGCAGTTAAGCAGCAACCCGAGATGCTCGCTCAGTTCCCTAGTCCACATTCTCTTACTTCAACCACAACAACAAATAACAGCAATGCTTCCAACACAAATTCACAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTAATAGCTTTATCACCAAACACACTAATGGCAACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTTAAGCAGAGAACAAGCACGGAGGTTCGAAAGAGGGTTTATGTTTGTCCAGAACCTTCGTGTGTCCACCACAATCCTGCAAGAGCACTGGGTGACCTCACCGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGTACCATTTTTTCAAGAAGAGACAGTTTCATTACACACAGAGCTTTCTGTGACGCACTAGCTGAAGAGAACAACAAAGCCAACGAAGGACAATTACCAAAGATAGGTCCAAACTTGCAATGTCAACAGATTCCAAACCTTGTTTCCTCGTTACCAATCAACACCAACGTTGTTCCCAACCCACAACAAATCGGTGGCACCTCGGAGTTCAACCATGCTGAACACAAGCACCCACTGTCACTCCCACACGAGCTAATGCCAATGCCTGCACCAAAACCCTTCAACTCCAACACTACCATGGCAGGAACAGTGTTCTCCAGAAGCCTCTCATCAACCTCTTCACCGTCTCTCCAACTAAGTTCAAACATATTCGAGGAAAACGGGCTCCACCTGGCTGCAGGGTCGCAACACATGTCAGCCACCGCACTGCTGCAAAAAGCTGCGCAAATGGGAGCAACAGTGACGGATAAAAATTTTACCACAAACATGGCACCGCCGTCGTTTGGGGTGCTGCAACAGCATCCGAATGGACAATCCTTCATGAACCAGTACATGCACAGTGGCCAACAGGATCCCAACGTTAGCATCTCCGCTCAGTATAACGGTTTCGGCGCAAATGGGATGAGTGGAGGGAGCGTTGGAATGAACGGTGTGGACATGTTCAACGCTATCTTGGACCAAAGCAAGGCTTTATCAAAGATCATAGAGCAAAGCAACAGAAGCAGTAATGGAGGTGCAACAAATGGAGGTTCAAGTGCTGCTATTAACGTCGGTGGAAGTAAAGGAAGTGAGGATGTGATGACTTTGGACTTTTTGGGAATAGGAGGTGGCGGTGGCGGCGGCGGTGGTGGCGGTGCGCATGGAAACTTTTATGGTGGTGCTCAGCAAGCAGAAAACGGTGCGCCGGATGAGGTTTGGAGAAACTGGTCAAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTTGA 1572 0.4733 MSNITSCDSGSFSTENTREDAAVKQQPEMLAQFPSPHSLTSTTTTNNSNASNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSLPINTNVVPNPQQIGGTSEFNHAEHKHPLSLPHELMPMPAPKPFNSNTTMAGTVFSRSLSSTSSPSLQLSSNIFEENGLHLAAGSQHMSATALLQKAAQMGATVTDKNFTTNMAPPSFGVLQQHPNGQSFMNQYMHSGQQDPNVSISAQYNGFGANGMSGGSVGMNGVDMFNAILDQSKALSKIIEQSNRSSNGGATNGGSSAAINVGGSKGSEDVMTLDFLGIGGGGGGGGGGGAHGNFYGGAQQAENGAPDEVWRNWSSKNAGFESFSATSSI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01395 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 490 IPR031140 -
Vian3g01395 523 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Vian3g01395 523 MobiDBLite consensus disorder prediction 1 20 - -
Vian3g01395 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Vian3g01395 523 MobiDBLite consensus disorder prediction 31 60 - -
Vian3g01395 523 MobiDBLite consensus disorder prediction 1 76 - -
Vian3g01395 523 FunFam protein indeterminate-domain 12-like 70 138 - -
Vian3g01395 523 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Vian3g01395 523 Gene3D Classic Zinc Finger 146 225 - -
Vian3g01395 523 Gene3D Classic Zinc Finger 70 137 - -
Vian3g01395 523 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Vian3g01395 523 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Vian3g01395 523 SMART c2h2final6 167 187 IPR013087 -
Vian3g01395 523 SMART c2h2final6 132 162 IPR013087 -
Vian3g01395 523 SMART c2h2final6 91 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01395 Vian-Chr3 15341743 15345168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01395 48 350 IDZ Gene Family AT3G50700 56.881 1.25e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g01395 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01395 - - gmx:100785295 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00844 6 25526172 25529200 Vian3g01395 3 15341743 15345168 ECH
Vian3g01395 3 15341743 15345168 Vian3g01395 3 15341743 15345168 ECH
Vian2g02143 2 41335578 41338819 Vian3g01395 3 15341743 15345168 PCT
Vian6g00844 6 25526172 25529200 Vian3g01395 3 15341743 15345168 PCT