Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01392 ATGGATCAGGAGGAGCAAGATAAAGCTTTGCCCATTGCAAATGTGGGTAGAATCATGAAGCAAAATCTTCCTCCAAGTGCAAAGATCTCCAAGGAAGGGAAACAACTAATGCAAGAGTGTGTTACAGAGTTCATAAGTTTTGTGACTGGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGGCCATAGCAAGGTATTTGCATAAATACAGGCAAGCAGAAAGGGAGAAAATCCAAAACAACAACAAAAAATATGAAGGATCAGCAACAAAATCTCTCAACCAAACTCAACTCATCCTTGCTCCACCACCACCACCATCACTCTCTAGGGTTACTCATGACAAGCTTCAAAACCCTCCCACCACAGATCAATCGTAG 444 0.4324 MDQEEQDKALPIANVGRIMKQNLPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIARYLHKYRQAEREKIQNNNKKYEGSATKSLNQTQLILAPPPPPSLSRVTHDKLQNPPTTDQS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01392 147 SUPERFAMILY Histone-fold 6 108 IPR009072 GO:0046982
Vian3g01392 147 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 109 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vian3g01392 147 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
Vian3g01392 147 MobiDBLite consensus disorder prediction 105 120 - -
Vian3g01392 147 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Vian3g01392 147 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Vian3g01392 147 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vian3g01392 147 Coils Coil 78 98 - -
Vian3g01392 147 MobiDBLite consensus disorder prediction 133 147 - -
Vian3g01392 147 Gene3D Histone, subunit A 1 123 IPR009072 GO:0046982
Vian3g01392 147 MobiDBLite consensus disorder prediction 100 147 - -
Vian3g01392 147 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01392 Vian-Chr3 15293028 15293471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01392 5 103 CCAAT-HAP3 Transcription Factor Family AT1G09030 72.727 8.80e-54 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian3g01392 CBFD_NFYB_HMF 4.9e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01392 K08065 - gmx:100815151 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01392 3 15293028 15293471 Vian3g01392 3 15293028 15293471 ECH