Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01362 ATGAAGAACTCAAATGGCTCTAGAGAAAATGGAGGAAGTTACGTTTTTCTCCTCCTCCCCCTTCTCATCGTTCCTCTTGCGGCTGCACAATCTACAACCAATAACCAAAACGAATCGTATTACAACCGCTTCAGCCCTTCCATGGCCATCATAATCGTCATCCTCATCGCCGCCGTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCCGACTCCCCCTCCGCAAGCATCCGCAACCTCACCGGAGCCACCTCCCGCCAGCGCCGTGGCCTCGATCAGGCCGTCATCGACACTTTCCCCACGCTGGAGTACTCCGTGGTGAAGATCCACAAGCTTGGAAAGGGGACGCTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCTAAGTGCGATCACGTGTTTCACCCGGAGTGCATCGACGAGTGGCTCGCCTCCCACACTACCTGCCCCGTTTGCCGCGCTAACCTCGTCCCCGAGCCCGGAGACTCCGTCAGAGGAATTCCGGTTCTCAATGCTCCTAACGACATCGAGGCCCAATCCGAAGCCCAACCCGAGGCCCACAACGACGCCGTCGAGCCTCTTCCCGAACAACAGCAAGAGCCTAAGCTTCCGATTTCCTCTGAACCCCCTCAAGTGCTCGGCCTAAACCAGACGCTGAACCGGAACCGCACGAGAGGCTCCCGGTCGGGCCGCCCCCGCCGGTTCCCCCGCTCTCACTCGACCGGTCATTCGCTGGTCCAACCCGGCGAGGACACTGAGAGGTACACCTTGAGGCTTCCTGAGGAAGTTAGAAAACAGCTACTTCTCAACCCGGAACTGCATCGAGCGAGAAGCTTGGTTATGTTGCCCAGGGAAGGTAGTTCGCGGCGTGGATATCGAACCGGCGAGGGAAGTAGCAGAGGGAGGTCTTCGCGGCGGTTGGACCGGGGGTTTAAGTCCGACCGCTGGGTTTTCACTATGGCGCCGCCTTTCTTAGTGAGGGCCTCTTCCGTTAGGTCTCCAAGGGTGGCCAATAACGGCGGCGCAGGAATATCTGCTACTGCGCCCTTTCCGCCGCCGGCTGCTGCGGATTCTGTTTGA 1113 0.5876 MKNSNGSRENGGSYVFLLLPLLIVPLAAAQSTTNNQNESYYNRFSPSMAIIIVILIAAVFLMGFFSIYIRHCADSPSASIRNLTGATSRQRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQSEAQPEAHNDAVEPLPEQQQEPKLPISSEPPQVLGLNQTLNRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERYTLRLPEEVRKQLLLNPELHRARSLVMLPREGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSVRSPRVANNGGAGISATAPFPPPAAADSV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01362 370 Pfam Ring finger domain 121 164 IPR001841 -
Vian3g01362 370 MobiDBLite consensus disorder prediction 348 370 - -
Vian3g01362 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 169 IPR013083 -
Vian3g01362 370 FunFam E3 ubiquitin-protein ligase ATL6 82 170 - -
Vian3g01362 370 CDD RING-H2_EL5-like 121 164 - -
Vian3g01362 370 SUPERFAMILY RING/U-box 115 170 - -
Vian3g01362 370 MobiDBLite consensus disorder prediction 211 236 - -
Vian3g01362 370 MobiDBLite consensus disorder prediction 300 318 - -
Vian3g01362 370 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vian3g01362 370 PANTHER RING FINGER DOMAIN-CONTAINING 31 173 - -
Vian3g01362 370 SMART ring_2 122 163 IPR001841 -
Vian3g01362 370 MobiDBLite consensus disorder prediction 190 265 - -
Vian3g01362 370 MobiDBLite consensus disorder prediction 293 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01362 Vian-Chr3 15031203 15032315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01362 1 370 Rapid Response to Elicitors AT3G05200 45.358 2.00e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01362 K10664 - gmx:100810865 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01362 3 15031203 15032315 Vian3g01362 3 15031203 15032315 ECH
Vian6g00870 6 25860780 25861913 Vian3g01362 3 15031203 15032315 PCT