Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01361 ATGTGTTTGCCAGAGGGAGAGAGAGAGAGAGAGAGAGCCATGGCACTGGAAGCAGTGGTGTTTTCACAATCACAAGACCCATTTGGTGGTTACGGATCAGTGAAGGACTTCTACAACTGCACTTTCTTGGCTGCTACTTCACCTAACTGGGGGGACTATGAACACATCAACATCAACATCCACAAAGAAGAAGAACAAGGTTCCATCTCTACTTTTCTCGATAATAGTAACAACCAACCAGACAATTACCCTTATGGAGGAGATTGGACCAGCTCCTCATCCTCTATCTTACCCCACTTGAATGATCTTCAAGAAGCCACAGACCCCAGTAACGCCACTCACAGCTTGGATACCTTAACCACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTCGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCGGACTCTTATATCCAAAGGAAAGAAGGAGAGCGGAAATCTGATGCTGGTGGTGCAACGAACATGCCCTTTTCTGAGTTCTTCGCCTTTCCGCAGTATTCAACAAGTGGTGGTGGTGGTGGCTCTGATAATTCTGCAACCGTAGGTGAAGACGTGGGTGAAGTTAAGTCTGGCATTGCTGACATAGAAGTGACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCCAAGCAACTCTTGAAGCTGGTCTCTGGTTTGCATACTATGCGCCTCACAATCTTGCACCTAAATGTTACCACCACCGGTGAAATTGTACTCTACTCTCTAAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCCGTTGATGATATTGCTGAAGCTGTGTACCAGACGCTGGATAGGATTCAGCAAGAGGCAGTGTTGAATTAA 945 0.4571 MCLPEGERERERAMALEAVVFSQSQDPFGGYGSVKDFYNCTFLAATSPNWGDYEHININIHKEEEQGSISTFLDNSNNQPDNYPYGGDWTSSSSSILPHLNDLQEATDPSNATHSLDTLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRKEGERKSDAGGATNMPFSEFFAFPQYSTSGGGGGSDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQEAVLN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01361 314 Pfam Helix-loop-helix DNA-binding domain 140 172 IPR011598 GO:0046983
Vian3g01361 314 MobiDBLite consensus disorder prediction 104 135 - -
Vian3g01361 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 174 IPR036638 GO:0046983
Vian3g01361 314 PANTHER MAX DIMERIZATION, MAD 91 174 - -
Vian3g01361 314 Gene3D - 124 260 IPR036638 GO:0046983
Vian3g01361 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 192 IPR011598 GO:0046983
Vian3g01361 314 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01361 Vian-Chr3 15004668 15005914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01361 14 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 43.810 3.42e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g01361 HLH 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01361 - - pvu:PHAVU_007G181900g 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01361 3 15004668 15005914 Vian3g01361 3 15004668 15005914 ECH
Vian6g00871 6 25885910 25886951 Vian3g01361 3 15004668 15005914 PCT