Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01342 ATGGTCTTTGAAATCAGTTCTGTTGTTTCAAAGTTGCAAATGGTATCCACTTCGGACCATTCCTCCGTTGTCTCCATGAACTTATTTGTGGCTCTTCTTTGTGCTTGTATTGTCATTGGTCATCTTCTTGAGGAGAATCGGTGGATGAATGAGTCTATCACTGCCCTTTTGATTGGTATTTCCACTGGCGTAGTCATTTTGCTGTTTAGTGGTGGTAAAAGCTCACATATTCTTGTTTTCAGTGAAGATCTTTTCTTCATATACCTTCTGCCGCCTATAATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATGACCATCATATTGTTTGGTGCTATTGGTACATTAATATCTTGTGCGGTCATAACTTTGGGTGCGTCACAAATTTTTGAGAAGTTGGATATTGGTCCGCTGGAATTAGGGGATTACCTAGCAATTGGTGCAATATTTGCTGCGACGGATTCTGTTTGCACATTGCAGGTGCTAAATCAGGACGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAACCACATAGACCCTTCAATAGCTTTGCACTTTTTGGGCAATTTCTTGTATTTATTTGTCGCAAGCACAATGCTTGGAGTGTTGACAGGTCTACTCAGTGCTTATATTATCAAAAAGCTGTACATTGGAAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCGTACCTATCCTACATGCTAGCTGAATTATGCTATCTAAGTGGCATCCTCACTGTATTCTTTTGTGGGATTGTTATGTCTCATTATACCTGGCATAATGTGACCGAGAGTTCAAGAATCACTACCAAGCATTCTTTTGCAACCTTGTCATTTGTTGCTGAGATCTTTATCTTCCTTTATGTGGGTATGGATGCCTTGGACATTGAAAAATGGAAATTCGTCAGTGATAGTCCTGGAACATCTATTGCAGCTAGTTCAGTATTGTTGGGCCTAGTTCTTGTTGGAAGAGCAGCCTTTGTTTTCCCCTTATCCTTTCTATCCAACTTGGCTAAAAAATCACCGAATGAGAAAATTAGCTTCAGACAGCAAGTGATTATTTGGTGGGCTGGTCTTATGAGGGGAGCTGTTTCAATGGCACTTGCATATAATCAGTTCACCATGTCGGGGCATACTTCACTGCGAAGCAATGCAGTCATGATCACTAGCACCATCACTGTTGTACTTTTCAGCACGGTGGTGTTTGGTTTGATGACTAAGCCACTCATAAGGCTTTTACTACCTCATACTCCACATCACAAAGAAATAAACATCGTGATAGCCACAGATGCATCTACTCCAAAATCAGCCACTGTCCCACTTCTTGGGAGTGCCCAAGACTCTGAAGTCGATATTGATCCAATCCATCGTCCAAGCAGCATCCGCGCATTGCTTAGAACTCCAACACACACTGTTCATCGTTTGTGGCGTAAGTTCGATGATGCATTCATGCGTCCTGTTTTCGGTGGAAGGGGTTTTGTTCCTGTAGAACCTGGCTCTCCATCTGAACGTAATGGTCATCAATGGCGTTGA 1629 0.4205 MVFEISSVVSKLQMVSTSDHSSVVSMNLFVALLCACIVIGHLLEENRWMNESITALLIGISTGVVILLFSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIILFGAIGTLISCAVITLGASQIFEKLDIGPLELGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNHIDPSIALHFLGNFLYLFVASTMLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELCYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIAASSVLLGLVLVGRAAFVFPLSFLSNLAKKSPNEKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTSLRSNAVMITSTITVVLFSTVVFGLMTKPLIRLLLPHTPHHKEINIVIATDASTPKSATVPLLGSAQDSEVDIDPIHRPSSIRALLRTPTHTVHRLWRKFDDAFMRPVFGGRGFVPVEPGSPSERNGHQWR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01342 542 NCBIfam sodium/hydrogen exchanger 3 24 446 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vian3g01342 542 PANTHER SODIUM/HYDROGEN EXCHANGER 16 520 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vian3g01342 542 Pfam Sodium/hydrogen exchanger family 30 442 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vian3g01342 542 Gene3D - 146 197 - -
Vian3g01342 542 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vian3g01342 542 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vian3g01342 542 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vian3g01342 542 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01342 Vian-Chr3 14827245 14832598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01342 6 540 Antiporters AT3G05030 76.994 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01342 - - gmx:100816746 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01342 3 14827245 14832598 Vian3g01342 3 14827245 14832598 ECH
Vian6g00904 6 26239795 26244026 Vian3g01342 3 14827245 14832598 PCT