LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g01341	ATGGGGTGTATAATTGGCAAAGAAGTATCATCGGGAATTATCTCCGAGGTGAAAGAGGAGAAGAGTGTGAGTGTTGAATCCAACGAGAAAGTTGATGAAGTGGCCACAAGCAGAGCTGAGGAGAACGTGGGAGAGGCTCTGAACGGTGAGAAGGAGAAGGAAGAGAATGGTGGTAGCGATGGAGTCCGGGGAACGAAGGGTGATAGAAGAAGGTCAAAGCCAAATCCAAGGCTAAGTAATCCACCGAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTAACAGCAGTGTGTGGTGAAGCCCTTAGTGGGTGGATTCCGCGAAGGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTTTGAGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGCCTTGCTGCAAGCCCTGACATAAAATTTACAGAGCCACAGGTTAAATGTTACACACATCAACTGCTATCAGGACTTGAGCACTGTCATAATCGAAACGTACTTCACCGTGATATAAAAGGATCAAATCTTCTTATTAACGATGAAGGGATACTTAAAATTGCTGACTTTGGCCTTGCAACTTTCTTTGATCCAGACCGCAGGCATCCCATGACTAGTCGTGTAGTTACCCTTTGGTACCGCCCCCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCTATTATGCCTGGACGTACTGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGATCACCTTCTGATGAGTATTGGAAGAAGTCAAAGATGCCTAATGCAACCTTGTTTAAACCTCGACAGCCATACAGGAGGTGTATAAGAGAGACATTTAAAGATTTTCCACCTTCATCTTTTCCCCTTATCGAGACTCTTCTTGCAATTGATCCAGCAGAACGAAAGAGTGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTCTTAGTCTTCCAAAATATCCACCAACAAAGGAAATGGATGCTAAAAGACGGGATGATCAAGCAAGGAGATCAAGAGCTGCAGGCAAAACTGGTGTTGATGGTCCAAAGAAGCATCGGATTCGCGATCGCGCTGCCAAAGCTGCTCCTGCTCCAGAAGCCAATGCTGAGCTTCAATCCAATGTGGATAGAAGGAGATTAATCAGTCATGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCTAATCACATTGATCCAGATATTATTCCTTCTGACATCTCTCTGGGTTCAACCTCGTACACCTATTCAAAGGAATCATTCCAAGCTTGGTCAGGTCCAATTGGTAATCCTGCCAACATTAGTAAGCAGAAGAAACACACTACTGGTGATGATGCATTGGATTTGTCAAAATCATACAAGGGAACTCTCAAGCATAAAGTTAAAGGAAAGAAAATCCCAGCCTAG	1737	0.4364	MGCIIGKEVSSGIISEVKEEKSVSVESNEKVDEVATSRAEENVGEALNGEKEKEENGGSDGVRGTKGDRRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRRADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYTHQLLSGLEHCHNRNVLHRDIKGSNLLINDEGILKIADFGLATFFDPDRRHPMTSRVVTLWYRPLELLLGATEYGVAIDLWSVGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPRQPYRRCIRETFKDFPPSSFPLIETLLAIDPAERKSASDALRSEFFTTEPYACDPLSLPKYPPTKEMDAKRRDDQARRSRAAGKTGVDGPKKHRIRDRAAKAAPAPEANAELQSNVDRRRLISHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIIPSDISLGSTSYTYSKESFQAWSGPIGNPANISKQKKHTTGDDALDLSKSYKGTLKHKVKGKKIPA	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g01341	578	MobiDBLite	consensus disorder prediction	18	89	-	-
	Vian3g01341	578	MobiDBLite	consensus disorder prediction	411	505	-	-
	Vian3g01341	578	PANTHER	CELL DIVISION PROTEIN KINASE	115	405	-	-
	Vian3g01341	578	SMART	serkin_6	117	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian3g01341	578	MobiDBLite	consensus disorder prediction	535	558	-	-
	Vian3g01341	578	FunFam	probable serine/threonine-protein kinase At1g54610	200	441	-	-
	Vian3g01341	578	Pfam	Protein kinase domain	117	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian3g01341	578	MobiDBLite	consensus disorder prediction	18	75	-	-
	Vian3g01341	578	SUPERFAMILY	Protein kinase-like (PK-like)	111	407	IPR011009	-
	Vian3g01341	578	Gene3D	Transferase(Phosphotransferase) domain 1	200	440	-	-
	Vian3g01341	578	MobiDBLite	consensus disorder prediction	468	492	-	-
	Vian3g01341	578	ProSitePatterns	Protein kinases ATP-binding region signature.	123	146	IPR017441	GO:0005524
	Vian3g01341	578	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	237	249	IPR008271	GO:0004672\|GO:0006468
	Vian3g01341	578	ProSiteProfiles	Protein kinase domain profile.	117	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian3g01341	578	Gene3D	Phosphorylase Kinase; domain 1	104	199	-	-
	Vian3g01341	578	MobiDBLite	consensus disorder prediction	419	456	-	-
	Vian3g01341	578	FunFam	probable serine/threonine-protein kinase At1g54610	104	199	-	-
	Vian3g01341	578	CDD	STKc_CDK9_like	117	401	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g01341	Vian-Chr3	14798113	14802490	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g01341	109	439	Core Cell Cycle Gene Families	AT5G10270	52.450	1.44e-118	358

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vian3g01341		Pkinase	9.4e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g01341	K08819		-	gmx:100817289	972.615