Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01328 ATGCCCATGGCATCCGATCTAAACGACACCGTTTTCCCTGAAGAAGATCTCGATGACGACGACGAAACCCAAGAAGACGAAGAGGAGGATGACGAAGACGACGACGTTTTAGACGATGAAGAAACGGAACCCTCTCACTCCGTCCTCGCAGCCATAACCCTGGCTGCCCCCGCTTCCGCCGTCTCCCAAACACTCGGAACCGCGTCAACGGCTATCGTTGTCGCCGATTCCTCGCCGAAGAGGCCGCGCACGGAGCAAGTCGAGGAGAAAAAGGCGCTGGACGATTCGCGGCGATTGTTCCAGCGTCTGTGGACGGACGAGGACGAAATTGGGCTCTTGCAGGGGTTTCTGGACTACACGGCGCAGCGAGGATCCTCTCACCACAACGACACTGCTTTGTTCTACGACCAGATCAAGTCGAAGCTTCAACTCGGTTTCAACAAGAACCAGCTCGTCGAGAAGCTCCGAAGGCTGAAGAAGAAGTACCGCAACGTCCTCACCAAAATCAACGATGGCAAGGAATTCTCCTTCAAGAGCCCTCACGACAGAGCCACCTTCGAAATCTCGCGGAGGATCTGGAGCAACACTGCTCCAATCACCGGCCCCGTCGAAGACGACGACGAAATCAACCCTAACCCTAATCTTATTCCCAACCCTAATTTCAGCCATTCGGCGAAGACGTCGCTGTCGCGGAAGCGGTCGCGGTCTCGACCGGAGAAGCGCGAGTTCCACGACGGTTCAGCGTTGAATAAGGATAGTAATTGTATTGGCAATAGTAACAATAATAGTAACAAAGATAATGAAAATTGTAACCATAGGCATAGCTTACAGGGTTTGATTGAAGAGACAGTGAGGAGTTGCGTGTCGCCGGTGTTGAAGGAGTTGGTGAGTGGTGGCATGGGATTTGGAAGTGGTTTTGGTTTTGGGGGAAGAGGGTTTGGAGTTGGAGGAGGGTTTCCATTGAATTCCTTGCAAATGCAAATGCCAATGGCTTTGAGTTCATTGAATTTGGGCATTGGGGAAATGGTGATGGATGAGAAGTGGAGGAAGCAACAGATTTTGGAGCTGGAAGTGTATTCCAAGCGCTTGGAATTGGTGCAGAATGAGATCAAGGTTGCTCTCGAGGAGTTGCGATCCTCTGGTGGAGGATGA 1152 0.5182 MPMASDLNDTVFPEEDLDDDDETQEDEEEDDEDDDVLDDEETEPSHSVLAAITLAAPASAVSQTLGTASTAIVVADSSPKRPRTEQVEEKKALDDSRRLFQRLWTDEDEIGLLQGFLDYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLTKINDGKEFSFKSPHDRATFEISRRIWSNTAPITGPVEDDDEINPNPNLIPNPNFSHSAKTSLSRKRSRSRPEKREFHDGSALNKDSNCIGNSNNNSNKDNENCNHRHSLQGLIEETVRSCVSPVLKELVSGGMGFGSGFGFGGRGFGVGGGFPLNSLQMQMPMALSSLNLGIGEMVMDEKWRKQQILELEVYSKRLELVQNEIKVALEELRSSGGG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01328 383 Pfam Protein of unknown function, DUF573 100 194 IPR007592 GO:0006355
Vian3g01328 383 MobiDBLite consensus disorder prediction 11 41 - -
Vian3g01328 383 PANTHER BNAANNG10740D PROTEIN-RELATED 13 376 IPR007592 GO:0006355
Vian3g01328 383 MobiDBLite consensus disorder prediction 1 48 - -
Vian3g01328 383 Coils Coil 349 376 - -
Vian3g01328 383 MobiDBLite consensus disorder prediction 197 270 - -
Vian3g01328 383 MobiDBLite consensus disorder prediction 251 266 - -
Vian3g01328 383 Coils Coil 148 168 - -
Vian3g01328 383 MobiDBLite consensus disorder prediction 213 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01328 Vian-Chr3 14643720 14644871 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01328 3 383 GeBP Transcription Factor Family AT5G28040 43.908 3.28e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vian3g01328 DUF573 1.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01328 - - gmx:100817182 437.573