Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01326 ATGCTTTCTCCGTTGGTTTCTTGGTTCTTGTCTCCTTCCTCCTCCTCTTCCTCTTCCGAAGAAGAAGAAAACCTTGACATTAACACTCATGATCACACTAAGCATCAAAACCACCAAAACTTCAATACACAAGATGATGATAATGACCAATATCTTAGCTCATGCGATGTGGATGAAATCATTCCCGTTGCTCTTGCCGTTCCCAGTGCCACCCCTGCCGTGACGGTGGCCTTTCCGGCCGACGATGTCAGAAGCACGGTTCCCGGCACCACCGCCACTGCCACCACATTTGTAACACGCTCAAAAGGGCAGTGCTCCAACAAGTATTCGGGCATTGTGAGACAATATCAGAGACTGTGGACGAAGCAGGACGAGAAGGAACTGCTAAAGGGATACCTTGATTACATTAAGCAGCATGGGAGGACAACCACCACCCTCCAAAACGACGTAGCCTCGTTGTATGATCACGTGAGGCCCAAACTGAACGTCGATTTCAACAAGAATCAGCTTGTTGAGAAGCTGCGTAGACTAAAGAGGAAGCACAAGTTGGCTTTGAACAAAGGCACGGACAAGGAAGTTCCCTTTAGGAACCCCCAGGAACAGGCCATTTTCGAAATTTCAAACAAGATTTGGGGCAATGACACTGATATCCTATTAGACCAAGAGTCTTTGGATGGTGATGCGTCGGGACGCACTCCTGAAAGTCGTTACCTTGGGGGCAACGTTAAGGTGAAGGTTGATCAACTTGACAACAGTGATGAAATAGACGAGAGAGTGCCAAAGCGGTTGCGGTTAGATGATGCAGAAGATGTGAACAGAACAAATGAACATAACAATAGTGGCAGCCTGCAGGTCTTCATTGAGGAGACCATGAGGTCCTGTTTCTCCCCATTGCTGAAGGAAATGTTGGATGAAGTAAACCAAGAGCCACCTCCTGGGTTGGTGCCAATCCCATTGCCGCTATTTCCTGAGGAAGTAGACCATGAGCAATGGAGAAAACGAGGGATTTTAGAGCTGGAGGTGTATTTGAAGAGGTTGGAGTTGTTGCAGGATCAGATCAAGGCTAGATTGGAGGAATTGCGATCTAGACGGGAGGTGTATGATAAAACTTCTCCAGGATGTGCAGACACAGCTTGTGCTTTATCCAACACCAACAACTTCAACGAATAG 1170 0.4735 MLSPLVSWFLSPSSSSSSSEEEENLDINTHDHTKHQNHQNFNTQDDDNDQYLSSCDVDEIIPVALAVPSATPAVTVAFPADDVRSTVPGTTATATTFVTRSKGQCSNKYSGIVRQYQRLWTKQDEKELLKGYLDYIKQHGRTTTTLQNDVASLYDHVRPKLNVDFNKNQLVEKLRRLKRKHKLALNKGTDKEVPFRNPQEQAIFEISNKIWGNDTDILLDQESLDGDASGRTPESRYLGGNVKVKVDQLDNSDEIDERVPKRLRLDDAEDVNRTNEHNNSGSLQVFIEETMRSCFSPLLKEMLDEVNQEPPPGLVPIPLPLFPEEVDHEQWRKRGILELEVYLKRLELLQDQIKARLEELRSRREVYDKTSPGCADTACALSNTNNFNE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01326 389 Coils Coil 339 370 - -
Vian3g01326 389 PANTHER BNAANNG10740D PROTEIN-RELATED 13 359 IPR007592 GO:0006355
Vian3g01326 389 Coils Coil 167 187 - -
Vian3g01326 389 MobiDBLite consensus disorder prediction 1 25 - -
Vian3g01326 389 MobiDBLite consensus disorder prediction 1 22 - -
Vian3g01326 389 Pfam Protein of unknown function, DUF573 117 212 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01326 Vian-Chr3 14635976 14637145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01326 60 362 GeBP Transcription Factor Family AT5G28040 32.698 1.25e-46 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vian3g01326 DUF573 1.9e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01326 - - var:108344158 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00928 6 26544751 26545974 Vian3g01326 3 14635976 14637145 PCT