Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01311 ATGTTCGATGGAGTACCTGAGCAGTTCCACCAATTCATAACTCCAAGGACCTCACTGCCTCTTCACTTACCTTTCCCTCTCCATGCTTCTGGCACTCCCAATACCACCTTCCCTTCCAATTTTGATCCTTACAACCCTCATCAGCTGCCACTCCAACCCAACACTCTCTTGCACCCGTTACACCATCCACCCCCTACCCACAAAGATGAACAAGACAAGGAACAAAACACCGCTGTCTCAATGAACTTCCAAATCCAAAGAGATCAAGGGCACCAACTTCCCCAGCTCATTGATCCCTGGACTAACGACGAAGTCCTTTCTCTCTTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGAACTCACTTGGGAACACGTTTCCAGGAAGCTGGCAGAGCTTGGATATAAAAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAAAGTAGATACTTCAACAACAACATTAATTACGGCAAGAATAACAACAATTATCGGTTTCTCAGTGAGCTCGAACAGCTTTACCATCAAGGGGGTGCCGATCATCTCGGGACCCAAGAAAAGACTCAGCAACTACACAAACAAGACAAGATGGACCACCATCCATTGGAAGAAGGGGATTCTGGAAAACTCGAGGCACCCGTGACAAAACAAAACCACGATGCAGCAGCTCTGGAGAAGAATCAGGGACGCAAGAGAAAGAGGCCCGGTAGGTTTGAAATGTTTAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCGCAGCAAGAAGAGATGCACAACAAGCTCCTCGAGGACATGATGAAGAGAGACGAAGAGAAGTTCACTCGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTCGAGATGATGGCTCGTGAGCAGGCCATTGCAGGTGATAGACAGACCAACATTATTCAAATACTGAACAAATTCTCGGTCACTCCTGCATCGAACAAGAGCCTCAAGGTAGTAACTAATGGCTCAAACCTAAAATCTCACATTACCCAAAACCCTAATCCTTCACAAAACATCCCAGCTACACCCGCAACAGAAAACCCTACCTCGAGTGTTGCACAAGACACGTTACAACTGATTGCCAATCCTTCTACTTCTTCCTCTTCGGCTCAAGTTCCTCAACCCAACCCTAGTTCTTCCTCTCTAAATAGCCAGAATAACATAAACCCAATAGAGAGAAATTCGGTTTTGAATAAAAGCTTGTCATCAAACGTTGGCGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGACGAAGTGTTGGCACTGATAAACCTGAGGTGCAGCAGTGTGAGCAACAACGGCAGCAATGAGGAGAAGGAAGGGAACAAGGTGCCTCTGTGGGAGAGAATCTCACAAGGGATGTCGGAATTAGGATACAGGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTCAATAAGAAGAGGTCCCTCGACTCAAGGACTTGTCCCTACTTTCATCAATTGAGCAGTCTCTATAATGAAGGAAAACTGGTTCTACAATCCGAACGGCCAGAAAGCCACACGGATAATCCACCTGAGAATCTGGAGCAAGTGCAAGCGGATCAAACACGAGCCGAGTCTTCTTCTCAAGTGGGGTCTGGTGGTTTCAGCGTGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1767 0.4646 MFDGVPEQFHQFITPRTSLPLHLPFPLHASGTPNTTFPSNFDPYNPHQLPLQPNTLLHPLHHPPPTHKDEQDKEQNTAVSMNFQIQRDQGHQLPQLIDPWTNDEVLSLLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYGKNNNNYRFLSELEQLYHQGGADHLGTQEKTQQLHKQDKMDHHPLEEGDSGKLEAPVTKQNHDAAALEKNQGRKRKRPGRFEMFKGFCESIVHKMMAQQEEMHNKLLEDMMKRDEEKFTREEAWKKQEMEKMNKELEMMAREQAIAGDRQTNIIQILNKFSVTPASNKSLKVVTNGSNLKSHITQNPNPSQNIPATPATENPTSSVAQDTLQLIANPSTSSSSAQVPQPNPSSSSLNSQNNINPIERNSVLNKSLSSNVGEKDDVGRRWPKDEVLALINLRCSSVSNNGSNEEKEGNKVPLWERISQGMSELGYRRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNEGKLVLQSERPESHTDNPPENLEQVQADQTRAESSSQVGSGGFSVQQQVDHGGEKTLMQVPSLDFDQF 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01311 588 MobiDBLite consensus disorder prediction 377 402 - -
Vian3g01311 588 MobiDBLite consensus disorder prediction 538 573 - -
Vian3g01311 588 Gene3D - 429 494 - -
Vian3g01311 588 Gene3D - 100 156 - -
Vian3g01311 588 MobiDBLite consensus disorder prediction 339 365 - -
Vian3g01311 588 FunFam Trihelix transcription factor GT-2 100 156 - -
Vian3g01311 588 Pfam Myb/SANT-like DNA-binding domain 98 176 IPR044822 -
Vian3g01311 588 Pfam Myb/SANT-like DNA-binding domain 427 517 IPR044822 -
Vian3g01311 588 FunFam Trihelix transcription factor GTL2 429 494 - -
Vian3g01311 588 PANTHER FI21293P1 63 575 - -
Vian3g01311 588 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Vian3g01311 588 ProSiteProfiles Myb-like domain profile. 428 489 IPR001005 -
Vian3g01311 588 MobiDBLite consensus disorder prediction 189 213 - -
Vian3g01311 588 CDD GT1 427 496 - -
Vian3g01311 588 Coils Coil 257 277 - -
Vian3g01311 588 MobiDBLite consensus disorder prediction 528 588 - -
Vian3g01311 588 MobiDBLite consensus disorder prediction 188 215 - -
Vian3g01311 588 MobiDBLite consensus disorder prediction 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01311 Vian-Chr3 14521830 14523984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01311 1 521 Trihelix Transcription Factor Family AT5G28300 40.436 5.45e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian3g01311 Myb_DNA-bind_4 7.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01311 - - gmx:100804367 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01311 3 14521830 14523984 Vian3g01311 3 14521830 14523984 ECH
Vian6g00939 6 26632331 26634582 Vian3g01311 3 14521830 14523984 PCT