Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01307 ATGGGTTCCGTGGCCTCCTCTAAGAAAAACAACGAATGCAGTGAGAGATTAAGTGAGGCTCAAGACGTGCCCCAGCTGAAAAGTTCTAAACAGAAGAAAATTGATTTGGTGAAGCATGAAAAGTTTGCCAGATTTGAAAGTGAATCAACTAAGATTGATACTGAAACAAAGGCTTTGGGAAGGAAGTACAAGCCTCAAGCCTATTCATTTGTGGCGGATTTCAGGAACTTGGGAAGAAGATCAGACTCTAATTACATGCGTTTGAGGTGCTTTGATCTGTATAAACTGCACTCTTGGGCAGGAGGGTTAACTGAATTTGCAGATGGAAGAAATCAGGAGAGTACTAGTGAAGCTGTGAATGCATATTATTCTGCAGCATTGATGGGTCTAGCATATGGTGACACTCAACTTATTGCCACTGGATCAACACTTGCAGCATTGGAAATTCATTCAGCTCAAATGTTGTGGCATTTGGGAGAGGGACATAAACTGTACGAGGAAGATTATACAAAAGAGAACAAGGTGGTAAGTGTTGTGTGGGCTAACGAGATAGTGGACTACTCAGTGGAGAGAGTGCAGGCTTGTATTCATGTTTTACCACTGTCTCCTATTACCGAGGCCTTGTTGTCAGAAGTTGGTTATGTGAAGGAAGTTGTACCAAGAGAAAATAGTCCAGAACAAGATGCTAACAAGACTTTGAACAGCCACAGTGCATCCCTGATTACCTATTCTGATTGTGAGGAAGAGGATCTCATTCCAATGAATAATATTGTGAATAAACCTCAAGAGATGAGACAGCTAACGCCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAACAGGCTAAAGGCTGAGAGCCCTGACATGGCTCACAAAGAAGCTTTTAGTACAGCTGCAAAAATAACGGTGCTTTTCTTAAGCATTACCTTGAAAATATTTGTCATTTTCACTGGGCCAATTTTCCCCCAACTCAGTGCAAAGGAGATGATCAAGAGAGCTGCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTAATGTTGAGGTAA 1062 0.419 MGSVASSKKNNECSERLSEAQDVPQLKSSKQKKIDLVKHEKFARFESESTKIDTETKALGRKYKPQAYSFVADFRNLGRRSDSNYMRLRCFDLYKLHSWAGGLTEFADGRNQESTSEAVNAYYSAALMGLAYGDTQLIATGSTLAALEIHSAQMLWHLGEGHKLYEEDYTKENKVVSVVWANEIVDYSVERVQACIHVLPLSPITEALLSEVGYVKEVVPRENSPEQDANKTLNSHSASLITYSDCEEEDLIPMNNIVNKPQEMRQLTPSAYNCFIKEEINRLKAESPDMAHKEAFSTAAKITVLFLSITLKIFVIFTGPIFPQLSAKEMIKRAARQINLWILTPKWTLLMLR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01307 353 PANTHER ENDO-1,3(4)-BETA-GLUCANASE 1 60 220 IPR005200 GO:0052861
Vian3g01307 353 Pfam Glycosyl hydrolase family 81 C-terminal domain 59 217 IPR040720 -
Vian3g01307 353 MobiDBLite consensus disorder prediction 1 25 - -
Vian3g01307 353 Pfam YABBY protein 223 303 IPR006780 GO:0007275
Vian3g01307 353 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01307 Vian-Chr3 14475026 14477282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01307 60 219 Glycoside Hydrolase AT5G15870 55.621 1.73e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vian3g01307 Glyco_hydro81C 3.6e-39 CL0059
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01307 K01180 - gmx:100816319 266.544