Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01304 ATGGATAGGGTGTTCTCCTCAGTCGACGAAATCTCCGATCACTTCTGGCCATCGCCGCCGATCCCCGTCTCCGCCGCCGATGAGGCCTCTAAGATGAGCCGTAGCGCCTCCGAGTGGGCCTTCCAACGCTTCATCCAGGAAGCTTCCGCACCCTCTCCCCCCTCTCCTTCCTCCGCCACCACGGCTACTTCTGCGGCCGCCACTGACGTTGTCTTTGTCGAGATCGACGATCATCCCAAACCTGCCCCTGCTCCTCCCCAGAACGCCGCCGTTTTGCCCAATGCCCCTGTTCCCGTACCCCTTGACTCCGATGAGTACCAGGCCTTCCTCAAGAGCAAGCTCAACCTTGCATGCGCTGCTGTTGCCATGACTAGGAGTAATACAGATATATTACCTGTTTCTGTACTTCCTGGGGCATCTTTGGCTAAATCTCAAGAGCCAGCCCCTTTTTCTGATGGTGGATCACAGCCTATCGATCCTTCTCAAGTTGGATCTCAGACTACATCTAAAGGATCTATTCCTTCTGGAAATGATCCATCTAAGTTACAAGATAAAGATACGAAAGTACCAGTTGGGATGCCTTCCATACCTTCCACGCAAAAGAAACCTGTTGTTGCAGTTAGACCATCAACAAGTGGATCATCAAGAGAACTGTCAGATGATGATGATGCTGAGGGAGAGACATCTATGAACGACATGGACCCAGCTGATGCAAAAAGAGTAAGGAGATGTGAAGATGTGGAACCCTGGAGGATGCTATCCAATAGGGAGTCTGCCCGGCGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTGAAGCGCCTTACTGATGTAAGTCAGAAATACAGTGAATCTGCTGTTGACAACAGAGTTTTAAAAGCTGATGTGGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACCGGGTTGAATCCAATGGTTCATGCCATGTCTGACATGTCACCATTGGGCATGACGTTATTTGATGGAAGAAGCCCTTCAGACACTTCAGCAGATGCAGCTGTTCCTGTGCAAGATGATCATCATCACTTCTATCAACCCACATCTAATAATCCTATTCCCAGTCATGATCCGATAGTCAACGATGGGTTGGCGGGCATGTCTTCAATTGAAAATGTGCAGCAGAACCCTGCAGCAGTGGCAGGTGGGAACAAGATGGGTCAAACTTCTTCCCTGCAGCGGGTAGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGTGGATTCCTGTGGACCTCCCTCTAATGGGGAGCAGTAA 1350 0.4926 MDRVFSSVDEISDHFWPSPPIPVSAADEASKMSRSASEWAFQRFIQEASAPSPPSPSSATTATSAAATDVVFVEIDDHPKPAPAPPQNAAVLPNAPVPVPLDSDEYQAFLKSKLNLACAAVAMTRSNTDILPVSVLPGASLAKSQEPAPFSDGGSQPIDPSQVGSQTTSKGSIPSGNDPSKLQDKDTKVPVGMPSIPSTQKKPVVAVRPSTSGSSRELSDDDDAEGETSMNDMDPADAKRVRRCEDVEPWRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSESAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMVHAMSDMSPLGMTLFDGRSPSDTSADAAVPVQDDHHHFYQPTSNNPIPSHDPIVNDGLAGMSSIENVQQNPAAVAGGNKMGQTSSLQRVASLEHLQKRIRGGVDSCGPPSNGEQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01304 449 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 251 300 IPR004827 GO:0003700|GO:0006355
Vian3g01304 449 SUPERFAMILY Leucine zipper domain 251 297 IPR046347 GO:0003700|GO:0006355
Vian3g01304 449 CDD bZIP_plant_GBF1 261 299 IPR045314 GO:0003700|GO:0006355
Vian3g01304 449 Gene3D - 250 302 - -
Vian3g01304 449 Pfam Basic leucine-zipper C terminal 314 438 IPR020983 -
Vian3g01304 449 MobiDBLite consensus disorder prediction 1 29 - -
Vian3g01304 449 SMART brlzneu 235 307 IPR004827 GO:0003700|GO:0006355
Vian3g01304 449 PANTHER BASIC LEUCINE ZIPPER 63 1 439 - -
Vian3g01304 449 MobiDBLite consensus disorder prediction 149 180 - -
Vian3g01304 449 FunFam BZIP transcription factor 249 296 - -
Vian3g01304 449 MobiDBLite consensus disorder prediction 75 96 - -
Vian3g01304 449 MobiDBLite consensus disorder prediction 142 241 - -
Vian3g01304 449 Coils Coil 263 290 - -
Vian3g01304 449 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 251 265 IPR004827 GO:0003700|GO:0006355
Vian3g01304 449 MobiDBLite consensus disorder prediction 79 93 - -
Vian3g01304 449 Pfam bZIP transcription factor 251 299 IPR004827 GO:0003700|GO:0006355
Vian3g01304 449 Coils Coil 305 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01304 Vian-Chr3 14446936 14453062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01304 1 336 bZIP Transcription Factor Family AT4G02640 37.430 8.02e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian3g01304 bZIP_C 2.9e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01304 K25784 - gmx:100170702 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01304 3 14446936 14453062 Vian3g01304 3 14446936 14453062 ECH
Vian6g00954 6 26759213 26761269 Vian3g01304 3 14446936 14453062 PCT