Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01302 ATGAACACCAAACAAAGCAAGGCATTAGTTAGTAGAATGGATGTGGTCAATTTCGTACCAAACGAGGGTGTAAATAGTGAATTGCCGGGATTGGTTGCTAGCATAGAATGGGCCCAAGGGGTCCAATGGGCCCTCTTTGACGCACAACAAGAGGACAACAACTACAACAACTACTGCAACATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGTGCCTCTGCAACTGATCATGGCGAGTTAACTCTGAAGGGCAGTGGTGGCAAGAGAGGCTTCTCTGAAACTGCTTCTGTTGATTTAAAGCTCAATCTTTCTTCCAATAACGACTCTGCCTCGGTGTCACCGGCTACAGAGAACCCCAAAGAGAAAACTACAACAGTTGAACCTCCTCCTCGGGCTAACGACCCAGCAAAGCCACCTGCAAAGGCACAGGTGGTGGGTTGGCCACCAGTGAGATCATTCAGGAAGAACATAGTGAATGTTCATCAAAGGAGCAGTGGCAATGAAGAGGGTGAGAAGAGTGGTGGAGGAGCAGCGTTTGTGAAGGTGAGCATGGATGGTGCACCGTATCTACGGAAGGTGGACATAAGGTTGTACAAGAGCTACCAAGAGCTGTCAGAAGCGCTGGCCAAGATGTTCAGTTCCTTTACAATTCAGAAGTGTGGGTCCCAGGGGACCAAATTGATAGACCTTTTGAATGGCTCTGATTATGTACCCACATATGAAGACAAGGACGGAGACTGGATGCTCGTCGGTGATGTTCCCTGGGAAATGTTCGTTCAAACATGCAAGCGCCTCCGCATAATGAAGGCTTCTGAAGCAATTGGCCTTGAGCCATGGACAAGTGCAAGAGCAGAAGCTGAAGTGATTTCAGGAATCAGCAACAAGAATCGGCTTGCTTGTTCATTGGCCTCAGTCACAACGCACAGACACGGGGAACCCAATTCACTCCGGCAAGATTGA 972 0.4887 MNTKQSKALVSRMDVVNFVPNEGVNSELPGLVASIEWAQGVQWALFDAQQEDNNYNNYCNMINFEETELRLGLPGASATDHGELTLKGSGGKRGFSETASVDLKLNLSSNNDSASVSPATENPKEKTTTVEPPPRANDPAKPPAKAQVVGWPPVRSFRKNIVNVHQRSSGNEEGEKSGGGAAFVKVSMDGAPYLRKVDIRLYKSYQELSEALAKMFSSFTIQKCGSQGTKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQTCKRLRIMKASEAIGLEPWTSARAEAEVISGISNKNRLACSLASVTTHRHGEPNSLRQD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01302 323 Gene3D - 176 285 - -
Vian3g01302 323 ProSiteProfiles PB1 domain profile. 181 274 IPR000270 GO:0005515
Vian3g01302 323 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 63 279 IPR003311 GO:0005634|GO:0006355
Vian3g01302 323 Pfam AUX/IAA family 66 282 IPR033389 -
Vian3g01302 323 FunFam Auxin-responsive protein 176 284 - -
Vian3g01302 323 SUPERFAMILY CAD & PB1 domains 179 273 - -
Vian3g01302 323 MobiDBLite consensus disorder prediction 106 127 - -
Vian3g01302 323 MobiDBLite consensus disorder prediction 106 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01302 Vian-Chr3 14427860 14432092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01302 171 277 B3 DNA Binding Superfamily AT1G19220 33.621 4.18e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian3g01302 AUX_IAA 2.9e-77 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01302 K14484 - gmx:100781847 332.413