Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01299 ATGGTGTCGAGCCAGGTGGTGAAAGTGAAGAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAACTTCTACAAAGATGCCACCACCATCTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGATAAACTATCGGATGAGGAGATGGATTGCTGTCCTGTGTGCAAGATTGATTTAGGCTGCCTTCCGGTTGAAAAGCTCAGGCCAGACCATAATTTGCAAGATATAAGGGCAAAAGTATTCCCGTTTAAGAGAAAAAAGATCAAGGCCCAGGAAGTTTTGTCTTCAATATCATTGCCAACCAAAAGGAAAGAAAGATCACTTTCATCATTGGTAGTCAGTGCCCCCAAAGTTTCAATGCAACCCGGCTTTACAGGAAAGAGAACTAAAACCAGTACAAGAAAGGCTGCTGCTGCTTTACGTGGATGCGGTTTTCTTCTTGAATCCATAAAGAAGGAAGAAACAAACGGTGAAGATAATACGGATCCTTCAATGGCCGAGCCTTCTAAAAAGCATAAGCCTAATGCAGATAAAGAGAACAGTGTGGAACATGCAGAAGGGAAGGTTGATCTCTGGACACCCCTGAACTGTCTTGTTGAAGCTGCCAACCGAACAAAGTCCTCCAGGTCAAATTCACAAGCAATTCCTCTTGCCAAATTAGAGTCCCCGGTTACTCCTCATGGTGGACAAAATATACCTGAAATTACAACCAAAACAGAGCTACCAGCTTCTGTCCACAGTGAACTAAACATTCCAAAATCCAAAAATAAGTATACTGGACACAAAACAATATTTGGGGATGACAAGGATGCAAACAACTTGCCTTCAGGACCAGTGAAGAGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTTCCTCATCCCCAGCACCACTAAATGCAACAGGGAGCAAGTGCAACAGAAAAAATAGTCCTATCTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATATTCCCTTGCCACAGATCTCAGCATGTTATTTAAGAATAAAGGATGGTACTGTGCCCGTCTCATTTATTCAAAAGTACCTCGTGAAGAAACTTAATCTTTCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAAGCAGTGCTTCCATCATTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCCTCAACCTCGAAAAGGATACCAACATCAGTGGGGTCCTCAGCCAAAGATTTTGTGATGGTTTTATCGTATTGTCGAAAGACATTGCCCCCTTGA 1299 0.4349 MVSSQVVKVKRDTLRPCMTCPLCHNFYKDATTISLCLHTFCRKCIYDKLSDEEMDCCPVCKIDLGCLPVEKLRPDHNLQDIRAKVFPFKRKKIKAQEVLSSISLPTKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAAALRGCGFLLESIKKEETNGEDNTDPSMAEPSKKHKPNADKENSVEHAEGKVDLWTPLNCLVEAANRTKSSRSNSQAIPLAKLESPVTPHGGQNIPEITTKTELPASVHSELNIPKSKNKYTGHKTIFGDDKDANNLPSGPVKRRRLRPAGQKRVAASEMSSSSPAPLNATGSKCNRKNSPIWFSLVASEDQKGDIPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLSSEAEVEIMCRGQAVLPSLQLHNLVDLWFRTASTSKRIPTSVGSSAKDFVMVLSYCRKTLPP 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01299 432 MobiDBLite consensus disorder prediction 268 315 - -
Vian3g01299 432 MobiDBLite consensus disorder prediction 298 315 - -
Vian3g01299 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Vian3g01299 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 430 IPR044807 GO:0004842
Vian3g01299 432 MobiDBLite consensus disorder prediction 156 188 - -
Vian3g01299 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Vian3g01299 432 SUPERFAMILY RING/U-box 14 84 - -
Vian3g01299 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Vian3g01299 432 Gene3D - 309 408 - -
Vian3g01299 432 SMART ring_2 20 60 IPR001841 -
Vian3g01299 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01299 Vian-Chr3 14403621 14408274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01299 1 351 C3H Transcription Factor Family AT2G30580 43.666 1.24e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01299 K16277 - gmx:100783999 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01299 3 14403621 14408274 Vian3g01299 3 14403621 14408274 ECH