Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian3g01286 | ATGGGGACTCCCGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGAGGTATCTTGGATTGATGGACAGGTATTAAAAATCAATGGAAAGGATGCTGAAATTGAAACTACCAATGGAAAAAAGGTCAATGCAAATTTATCAAAAATATATCCTAAGGACATGGAAGCTCCTCCTGGTGGAGTGGATGATATGACTAAACTGTCCTATTTGCATGAGCCTGGAGTCCTGCAGAACTTGAAGGCTAGATATGAATTGAATGAAATATACACTTATACTGGAAATATTCTGATTGCTATAAATCCATTCCAAAGACTACCTCATATTTATGGTGCGCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCGATGATTAATGAAAAAAAAAGCAATTCAATTCTAGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACGACAAAAATGCTTATGCAGTACCTTGCTTTCTTAGGTGGTAGGGCTGGTACCGAAGGACGGACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGGAATGCTAAAACTGTTAGGAATAACAATTCTAGTTTTTTTGACATGTGGGCCATGAAGGATTCCTTGTGCTTCCTTCGTACTGCTTGTCTGAAATTATGGATTAACTCTATTACCAAAGAGTTGGTTTCAAATTCTCCTAGTGTTAATGGTGCAGTCGATTTGGAAATTGAGAAATACAAATTAGGAAATCCTAAATCATTTCACTACCTTAACCAGTCAAAATGCTATGAACTGGCTGATGTAAGTGATGCTCGTGAATATCTTGCCACTCGAAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGAATTCACCAAAGGAAAAGATGTTGACTCGTCGGTTCCAAAAGATGATAATGCCAAATTCCACCTAAAAACAACTGCTGAGCTTCTCATGTGTGATGCTGATGCCTTGGAAGATGCGTTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTTATAAAAAGGAGCCTTGACCCCCAAAGTGCAGCGGTGAGTAGAGATGGATTGGCAAAAACAATTTATTCTCGGCTATTTGACTGGCTGGTGGACAAGATAAATAATTCAATCGGACAAGACCCCAAATCTAAATCTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGTTTTAAAGCTAACAGTTTATCATGCTCTGCAGTTTCGAGCAATTTTGCATTAATTTCACAAATGAGAAATGATGGCTTTCAGCACGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGGAGATCAATTGGAGCTACATTGAATTTGTTGACAATCAAGATGTTTTGGACCTTATTGAGAAGAAACCTGGAGGAATCATTGCTCTCCTCGATGAAGCTTGCATGTTCCCAAAATCAACTCATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACGGATTTCACAATTGCTCATTATGCTGGGGAGGTACTATACCAGTCTGAGCAATTCTTAGACAAAAACAAGGATTATGTGGTTCCAGAACATCAAGATTTATTGAGTGCTTCCAAATGTTCTTTTGTATCTGGCCTTTTTCCACCACTTCCAGAAGAGACGTCAAAATCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGGGTGTTTTGGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGTCGTGCTTTCTTTGAATTTATAAACAGATTTGGCATCCTTGCCCCAGAGACCATGGAAGCAAACTGCGATGAAAAAACTGCTTGCCAAAAGATTCTGGAAAAGATGGAGCTTAAAGGATATCAGATTGGAAAAACAAAAATATTCTTGAGAGCAGGTCAGATGGCTGAATTAGATGCTCGGAGAGCTCAAGTACTTAGTAATGCAGCAAAAGTTATCCAACGTCGTGTACGAACCCATCAAGCACGCAGACACTATCTTGCATTGCGTAAGAAGACCATATACGTGCAGTCTCGGTGGAGAGGAAGACTTGCATGTAAACTCTATGAGCATTTGAGAAGGGAAGCTGCTGCTGTGAAAATTCAAAAGAACATACGTAGACATGAAGCTAGGAAAGCCTATAAAGAACTTCAGGTGGCAGTACTTACACTGCAACGAGCTATAAGGGCCACTGCTGCTCGCAAGGACTTCAGATTTAGGAAGCAGACTAAAGCTTCCATCATCATTCAGGCTGCAAAAGAAACTGGTGCCTTACAAGAAGCAAAGGATAAACTTGAAAAACGAGTGGAGGAACTAACATGGCGTCTCCAACTAGAAAAAGGTTTAAAGACAAATTTGGAAGAATCCAAAGCTCAGGAGATAGCAAAACTGCAGAATTCATTGCAGGAGTTGCAGATCAAATATGAAGAAACTAATGCTCTGCTCATTAAAGAGAGAGAGAATGTAAAGAAAGTTGTTGAAGAAGAACCTCCTGTCATTAAAGAAACACAGGTTATTGTTGAAGATACACAGAAGATTGAGACACTGACAGCAGAAATTGAGAGCCTAAAGACCTCGCTTGAGTCAGAGAAACAGAAATCTGATGACTTTGAAAGAAAATACAATGAAGCCCAAGCTTGTAGTGAAGAGAGAGGTAAAAAAATAGAAGACATGGAGAAGAAGGGTCGTCAGCTTCAAGAATCATTGACTAGGCTAGAAGAGAAGATTACTAATTTAGAATCAGAGAATCAGGTACTACGTCAACAAGCTGTGTCCATGGCACCTAACAAGTTCCTTTCAGGTCGTTCAAGATCAATCATCCAGAGAACTGAAAGTGGTCATATTATACCGGAAGCAAAGACACCCATGACCCAGGATAATAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTTCTCTTGTTACTCCAGCGCACACTCAAGGCTAGTGGTGCTGCTGGAATGGCTCCGCAACGCCGCCGTTCTTCATCTGCAACCTTGTTTGGGAGGATGACTCAAGTAAGCATAGTTCCCTTTTTCCAGAGTTTCCGTGGAACTCCAGCTGGAGTAAACCTTTCCCTAGTCAATGGTAGCGCAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCTGCCCTGCTTTTCAAACAGCAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGTGATAATTTGAAGAAAGAAATTTCTCCCTTGCTCGGATTATGCATCCAGGCACCAAGAACATCGAGAGCAAGCCTTGTTAAGGGATCATCACGTTCTGTTGCAAACACTGAAGCCCAGCGTGCCTTGATTGCTCACTGGCAGGGGATAGTGAAGAGCCTAGGAAACTTTCTAAACACTTTGAAAGCTAACCATGTTATCTTCTTTTACGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTCAAAGCTGGTCTGTCTGAATTGGAGCATTGGTGTTATAAGGCAACAGATGAGGTGCATTAACTTTGCACTGCTGTTCTCTTCAGTTCTTTTAACTACATGTACTAATATCTTCGACCCTCCAAAAACATTTCAGTATGCAGGTTCTGCCTGGGATGAGCTCAAACATATTAGACAAGCTATTGGATTTCTGGTCATTCATCAGAAACCAAAGAAAACATTGGATGAAATAAGCCATGACCTGTGCCCAGTCCTTAGTATACAGCAACTATATCGTATAAGCACCATGTACTGGGATGACAAATATGGAACGCATAGTGTGTCTTCTGATGTCATATCCAACATGAGAGTATTGATGACTGAAGATTCAAATAATGCAGTTAGTAACTCTTTCCTGTTGGATGATGATTCAAGCTACCAAGCTTATAATCACATGCATTCAGCTGAAACCTCACTTCAAGATTACTTTGTTGTGTCCCGAGGCAGAAAGCCTGCTTGCATTCCGTTTTCTGTTGATGACATATCGAAATCAATGGAACAGATAGATATTGCAGATATAGAGCCCCCGCCACTAATTCGTGAAAACTCAGGCTTTAGCTTTTTGTTGCCGCGCCCAGATTGA | 4185 | 0.4031 | MGTPVNIIVGSHVWIEDPEVSWIDGQVLKINGKDAEIETTNGKKVNANLSKIYPKDMEAPPGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPFGELSPHVFAVADVAYRAMINEKKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSFFDMWAMKDSLCFLRTACLKLWINSITKELVSNSPSVNGAVDLEIEKYKLGNPKSFHYLNQSKCYELADVSDAREYLATRRAMDIVGISQKDQEAIFRVVAAILHIGNIEFTKGKDVDSSVPKDDNAKFHLKTTAELLMCDADALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINNSIGQDPKSKSLIGVLDIYGFESFKANSLSCSAVSSNFALISQMRNDGFQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVLYQSEQFLDKNKDYVVPEHQDLLSASKCSFVSGLFPPLPEETSKSSKFSSIGSRFKGVLEAIRISCAGYPTRRAFFEFINRFGILAPETMEANCDEKTACQKILEKMELKGYQIGKTKIFLRAGQMAELDARRAQVLSNAAKVIQRRVRTHQARRHYLALRKKTIYVQSRWRGRLACKLYEHLRREAAAVKIQKNIRRHEARKAYKELQVAVLTLQRAIRATAARKDFRFRKQTKASIIIQAAKETGALQEAKDKLEKRVEELTWRLQLEKGLKTNLEESKAQEIAKLQNSLQELQIKYEETNALLIKERENVKKVVEEEPPVIKETQVIVEDTQKIETLTAEIESLKTSLESEKQKSDDFERKYNEAQACSEERGKKIEDMEKKGRQLQESLTRLEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRTESGHIIPEAKTPMTQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQVSIVPFFQSFRGTPAGVNLSLVNGSASRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQRALIAHWQGIVKSLGNFLNTLKANHVIFFYDGSAAHLVMENMSKLVCLNWSIGVIRQQMRCINFALLFSSVLLTTCTNIFDPPKTFQYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISNMRVLMTEDSNNAVSNSFLLDDDSSYQAYNHMHSAETSLQDYFVVSRGRKPACIPFSVDDISKSMEQIDIADIEPPPLIRENSGFSFLLPRPD | 1394 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian3g01286 | 1394 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 37 | 734 | IPR027417 | - | |
| Vian3g01286 | 1394 | ProSiteProfiles | Dilute domain profile. | 967 | 1309 | IPR002710 | - | |
| Vian3g01286 | 1394 | SMART | DIL_2 | 1155 | 1291 | IPR002710 | - | |
| Vian3g01286 | 1394 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | ProSiteProfiles | IQ motif profile. | 755 | 784 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | Coils | Coil | 821 | 859 | - | - | |
| Vian3g01286 | 1394 | Coils | Coil | 926 | 960 | - | - | |
| Vian3g01286 | 1394 | ProSiteProfiles | IQ motif profile. | 707 | 736 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | Coils | Coil | 786 | 813 | - | - | |
| Vian3g01286 | 1394 | Coils | Coil | 877 | 918 | - | - | |
| Vian3g01286 | 1394 | Gene3D | - | 250 | 300 | - | - | |
| Vian3g01286 | 1394 | ProSiteProfiles | Myosin motor domain profile. | 609 | 681 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | FunFam | Myosin 2 | 302 | 416 | - | - | |
| Vian3g01286 | 1394 | Pfam | Myosin N-terminal SH3-like domain | 9 | 50 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | SMART | MYSc_2a | 57 | 682 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | SMART | iq_5 | 754 | 776 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | SMART | iq_5 | 683 | 705 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | SMART | iq_5 | 706 | 728 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | SMART | iq_5 | 731 | 753 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | PANTHER | MYOSIN | 54 | 605 | - | - | |
| Vian3g01286 | 1394 | ProSiteProfiles | Myosin motor domain profile. | 62 | 608 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | Pfam | IQ calmodulin-binding motif | 734 | 753 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | Pfam | IQ calmodulin-binding motif | 686 | 704 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | ProSiteProfiles | IQ motif profile. | 732 | 761 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | ProSiteProfiles | IQ motif profile. | 684 | 711 | IPR000048 | GO:0005515 | |
| Vian3g01286 | 1394 | Pfam | DIL domain | 1235 | 1288 | IPR002710 | - | |
| Vian3g01286 | 1394 | Gene3D | - | 734 | 786 | - | - | |
| Vian3g01286 | 1394 | Gene3D | - | 683 | 733 | - | - | |
| Vian3g01286 | 1394 | Gene3D | Kinesin motor domain | 12 | 226 | IPR036961 | - | |
| Vian3g01286 | 1394 | Gene3D | - | 616 | 682 | - | - | |
| Vian3g01286 | 1394 | Gene3D | - | 450 | 610 | - | - | |
| Vian3g01286 | 1394 | FunFam | unconventional myosin-Va | 686 | 734 | - | - | |
| Vian3g01286 | 1394 | Pfam | Myosin head (motor domain) | 252 | 591 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | Pfam | Myosin head (motor domain) | 64 | 215 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | Pfam | Myosin head (motor domain) | 601 | 669 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 302 | 437 | - | - | |
| Vian3g01286 | 1394 | PRINTS | Myosin heavy chain signature | 475 | 503 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | PRINTS | Myosin heavy chain signature | 419 | 447 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01286 | 1394 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian3g01286 | Vian-Chr3 | 14258826 | 14273787 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian3g01286 | 1 | 994 | Myosins gene family | AT1G54560 | 68.503 | 0.0 | 1486 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian3g01286 | K10357 | - | gmx:100816792 | 1669.06 |