Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01282 ATGGCTGTGACAAGCCATCGAAGGAGCTCACATGTCAGACACATCATAATAGGTTTTGTGGCTGGCATTTCAGTGATTTTAGCTTTTGGTGCAGCATATTTTGGTGGTAGATGTTTGTACAATAGATGGCACTTATATAACAACTTCTTCTATGATTGGTTCAAACAGAACAATGAAGATTGGCCCTGGAGACTAGTAGCATTCCAGAGGATCAGCTTCACTAGTAGTGAGATTCTGACTTGCATGAAGGAATCAAATGTTATAGGAATGGGGAGCACTGGTATCGTTTACAAAGCTGAAATCCATAGACCTCACGTAACCGTAGCAGTGAAGAAATTGTGGAGGTCACGAACAGACATAGAAGATGGAAATGATGTGTTGAGAGAAGTGGAACTCCTAGGGAGACTTAGGCACAGGAATATAGTAAGGCTGTTGGGGTATGTACACAACGAAAGAAATGTGATGATGGTTTACGAATACATGCCTAACGGGAATCTTGGAACAGCACTACATGGTGAAGAATCTGCGAGGTTGCTTGTTGACTGGGTCTCAAGGTACAACATAGCTCTAGGAGTTGCACAAGGGCTTAACTACCTCCATCATGATTGCCACCCACCAGTTATTCACAGGGATATCAAGTCTAACAACATACTCCTTGACGCAAATTTAGAGGCGAGAATAGCAGACTTCGGGTTGGCAAGGATGATGATTCAAAAGAACGAGACAGTTTCCATGGTGGCTGGATCATATGGATACATCGCACCAGAATATGGATACACTCTGAAGGTTGACGAGAAGATTGACATATACAGCTATGGGGTGGTGCTTTTGGAACTTCTAACTGGCAAAATGCCTTTAGACCCTTCGTTTGAAGAATCTATTGACATAGTCGAATGGATACGGAAGAAGAAAAGCAACAAATCCTTGTTAGAAGCACTGGATCCTGCCATAGCTAGTCAATGCAAACATGTCCAAGAAGAAATGTTGCTTGTACTCCGGATTGCACTTCTATGTACCGCAAAGCTTCCCAAGGAAAGACCACACATGAGAGACATCATCACAATGCTTGGTGAGGCAAAGCCAAGAAGGAAAAGTGTTTGCCATAATGGGGGTCAAGAAAGCAGTAGCATGGAAAAGTGCATTGTCCTTACCACCTCCCCTGCTATAAGTCTTTTGTAG 1179 0.4309 MAVTSHRRSSHVRHIIIGFVAGISVILAFGAAYFGGRCLYNRWHLYNNFFYDWFKQNNEDWPWRLVAFQRISFTSSEILTCMKESNVIGMGSTGIVYKAEIHRPHVTVAVKKLWRSRTDIEDGNDVLREVELLGRLRHRNIVRLLGYVHNERNVMMVYEYMPNGNLGTALHGEESARLLVDWVSRYNIALGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMIQKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKMPLDPSFEESIDIVEWIRKKKSNKSLLEALDPAIASQCKHVQEEMLLVLRIALLCTAKLPKERPHMRDIITMLGEAKPRRKSVCHNGGQESSSMEKCIVLTTSPAISLL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01282 392 Pfam Protein kinase domain 84 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01282 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Vian3g01282 392 Gene3D Phosphorylase Kinase; domain 1 82 164 - -
Vian3g01282 392 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01282 392 SMART serkin_6 82 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01282 392 Gene3D Transferase(Phosphotransferase) domain 1 165 380 - -
Vian3g01282 392 SUPERFAMILY Protein kinase-like (PK-like) 77 356 IPR011009 -
Vian3g01282 392 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Vian3g01282 392 FunFam MDIS1-interacting receptor like kinase 1 165 375 - -
Vian3g01282 392 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 14 360 - -
Vian3g01282 392 FunFam MDIS1-interacting receptor like kinase 1 82 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01282 Vian-Chr3 14193399 14194712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01282 11 372 Receptor kinase-like Gene Family AT1G08590 69.415 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian3g01282 Pkinase 6.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01282 - - gmx:100793873 730.324