Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01280 ATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCCAGTGGTTCTTTCAATGACGATTCAGATGATGATGAATCTTTGGTTCCCGAAATAGATGATGGAGTGCATCTTGAGGAGCCGTTAACAGAAGAGGAAATTCAAGATCTTATTTCTGAGTTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCGCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTATAGTGGAGAGTGAAGTTAGACAAGAACTCAAGCAAAGTCTTCAGGGGGATGATTTGGAAACTGCTGTTGATAATGAGATGGCTACTTTTAAAGAAGAATGGGAAGCTGTTCTGGATGACCTTGAAACCGAAAGTGCCCACTTACTGCAACTCATGTGTGTTGCTCCCATTGAAGTTACCCTAAGGTTGCTTGCATTTGAACTTTCCCAGATCCCAAACTGGTCAAAGGAACAACTTGATGGGGCTGGCATTGAACTTCCTAGCCTTTTTAAGTTGATTGAAAAAGAAGCTCCTAATGTCTGCTCCACTGAAGCGTGGAAAAAGAGGAATCACTGGGTTGGCTCTGTTGCAACTTCAGAAATTGCTGAGTCAATTGCTGATGCCGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGAGCCAGTGAAAAATGAAACTGAGGGTGATTGGGATATGTTCAATAAAATAGTTTCCGATGGGAGCGGCATCGATGCTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCAGCCTTGATGGGACTGAAATTTCCTGGAGTTGATGAGGTTGAGGAGATTGATGATGTTGATGGCAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTTCAAATCCGTTTGAAACATAGGAGGCATAAAAAGATAAGTAAACAGCGAGAAATGAGTACACCTATCCTGTTGACAGACAGCCCTACACAAAAGCCTTCATATGCTGATCATTTAGACCCTGATACAAAAGAAGGAACTAATGATAATGGGAAAGTAGTCTCTGACAATGGCAATGATACATGTGTTCTTATCAAGACTGATAATATTAAAGGTTTGGATGCCAGTCATCATCTTGACAAAGAAAAGCTAACAAGTAGTGATGGCTTGTCAGATCCACCCAAATCCTCAGGGGATGGTGTTATTGAACAGAGAGGAATCAAACGTGTAAGCGGGGGTGAGCTTGATGCTGAAAATAAAAAATCTCGGCTTGTTGTTATTGATAGTGATGATGAAGCAGGAGTCACTAAGGAGAAATTAGATTGCAATACTCAAGAAGTAAAAGATGAATTAGGTAACAATGGTACTGGTTCTCTTCCTTCAGAGTGTCTGGATGAAAAATTTTTGTGCACCGTTTGTGATAAAGTCGCTCTTGAAGTGCATCCACACCCTCTCTTGAAAGTAATTACTTGTGGAGATTGCAACCGCTTATTAAAAGAAAAGGCACATGAAAAGGATCTGGGACAAGATTGTTCGGAGGGTTACTGTACATGGTGTGGAGGAAACAGTGGATTAGTTAGTTGTAAATTATGCAATATTTTATTCTGCACCAAGTGTTTAAAGAAGAATATTGGTGTAGAATTGGTTTCTGAAACTCAGGCCACTAGCTGGCATTGTTGTTGTTGTCATCCAAATCTTTTGCAAAGACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTCGTATAGTAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGACGATTCAGATGATTCAAATTATTCAGATGCACAGATTAATGTTACAATGAGCTCCAAGCGAAGACCCAAAAAGAAGATTCGTAGGATACTTGATGATACTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGGACAGTTTTCTGTTTCGTCAATTGAGATGAGCCCTGACGGATGTAATGGGAATTTATCAGAAGGTGCAAATGTTGAAGTTCTTGGTGATGCTCTAGCAGGTTACATAGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCAGCTAAACTGAAGGCGCATCAGATATCTGGAATAAGATTCATGTGGGAAAATATCATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTTTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTTATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATCTGGGGTTAAGAACTGCACTTATAGTCACACCTGTCAACGTACTACATAATTGGCGGCAAGAGTTCATTAAGTGGAGACCTTCTGAGTTAAAGCCACTCAGAGTCTTTATGCTGGAAGACGTACCAAGGGATAGAAGAGCGGAATTGCTTAAAAAATGGAGAGTTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCGTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGAGAAATGTGCCATGCTTTGCAGGATGGTCCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACACAGGCCTTGAAGCAAGTAAAGTGCCAGAGAAGAATTGCGCTTACTGGGTCACCCCTTCAAAACAATGTCATGGAGTATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGGCAAGGCTTTCTTTTCTCATTGTTCCGGTTTTTGCTGTCTCATATCCTCTATGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTGTTTGTGATAACTGTCAAGCTATCTCCCTTGCAGAGAAAATTGTATAAGAGATTCCTTGATGTGCACGGGTTCACTACCCAGGAGCATCCTGAATTGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCACGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGAATATGCAAAAGAAGAGGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCAAGTGACGAAAATTCTGATTATAATGTTCTTGCTGGAGAGAAGATGGGGTTTGCAAATGACTTATTGCAAAGGAAAGATGGTAATGGCTTTTTCCTCAAGGGTTGGTGGAATGACCTTCTTCATGGAAAAATATATAAAGAGATCGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACTATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACGTCGACGTGGAAAACGAGGAAAGTTTTGGAAGAAGGGGAAAGATTGGTATAGGTTGGATGGGAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACTAGAGCTGGCTCCTTGGGTATAAATCTTCAAGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTCACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTCTTTGAATTTGGTGATGATGACAACCCTGAGACTTTAGGCGATCTAGGTCAAGAAAACGAGCACCAAGAAAACCCAATTTCGGTTGGGCATTCTCTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCGTGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTGCAAGAAAATGAAGAGGAAAAACTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGAAAATCCCTGGAATGGGAAGAAGTCCAGAGAGTACCACTAGGTGAGTCTATTGTGCCTATTCAGAAACCAGAAATTCCAAATGACGTGCCCCTCGTATCAGAAACCTGTAACATCTTGCCAAGTAAACTAAGCCGACGTTTCGCATCACGGAAATGCACAAACCTTGCGCACATGTTGACACTTCGAAGCCAGGGAACAAAATTCGGTTGCAGTACTATCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 4521 0.4125 MEGKTEDEVVDIESASSGSFNDDSDDDESLVPEIDDGVHLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSIVESEVRQELKQSLQGDDLETAVDNEMATFKEEWEAVLDDLETESAHLLQLMCVAPIEVTLRLLAFELSQIPNWSKEQLDGAGIELPSLFKLIEKEAPNVCSTEAWKKRNHWVGSVATSEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKNETEGDWDMFNKIVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIRLKHRRHKKISKQREMSTPILLTDSPTQKPSYADHLDPDTKEGTNDNGKVVSDNGNDTCVLIKTDNIKGLDASHHLDKEKLTSSDGLSDPPKSSGDGVIEQRGIKRVSGGELDAENKKSRLVVIDSDDEAGVTKEKLDCNTQEVKDELGNNGTGSLPSECLDEKFLCTVCDKVALEVHPHPLLKVITCGDCNRLLKEKAHEKDLGQDCSEGYCTWCGGNSGLVSCKLCNILFCTKCLKKNIGVELVSETQATSWHCCCCHPNLLQRLSLQLEKAVGSARIVVSSSSSDSDDSDDSDDSNYSDAQINVTMSSKRRPKKKIRRILDDTELGEETKRKIAIEKERQERLKSLRGQFSVSSIEMSPDGCNGNLSEGANVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVPRDRRAELLKKWRVKGGVFLIGYTAFRNLSFGKHVKDRNMAREMCHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNVMEYYCMVDFVREGFLGSSHEFRNRQGFLFSLFRFLLSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPELLRKRCFFAGYQALARIWNHPGILQLTKEAKEYAKEEDAVENFLVDDSSSDENSDYNVLAGEKMGFANDLLQRKDGNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIRRRGKRGKFWKKGKDWYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLQAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLGDLGQENEHQENPISVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPWWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIVPIQKPEIPNDVPLVSETCNILPSKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTICGECAQEIRWEDLKKR 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01280 1506 SMART ultradead3 753 973 IPR014001 -
Vian3g01280 1506 Pfam SNF2-related domain 780 1068 IPR000330 GO:0005524|GO:0140658
Vian3g01280 1506 PANTHER RAD54-LIKE 16 134 IPR044574 GO:0016887
Vian3g01280 1506 ProSiteProfiles ADD domain profile. 504 636 IPR025766 -
Vian3g01280 1506 SMART helicmild6 1176 1273 IPR001650 -
Vian3g01280 1506 CDD ADDz_ATRX 512 610 - -
Vian3g01280 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1341 IPR027417 -
Vian3g01280 1506 Gene3D - 730 976 IPR038718 -
Vian3g01280 1506 Coils Coil 1389 1409 - -
Vian3g01280 1506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1153 1321 IPR001650 -
Vian3g01280 1506 MobiDBLite consensus disorder prediction 428 447 - -
Vian3g01280 1506 Gene3D - 1003 1117 IPR027417 -
Vian3g01280 1506 Coils Coil 107 127 - -
Vian3g01280 1506 CDD SF2_C_SNF 1141 1284 - -
Vian3g01280 1506 Gene3D - 1022 1099 - -
Vian3g01280 1506 MobiDBLite consensus disorder prediction 365 379 - -
Vian3g01280 1506 MobiDBLite consensus disorder prediction 631 665 - -
Vian3g01280 1506 MobiDBLite consensus disorder prediction 353 401 - -
Vian3g01280 1506 MobiDBLite consensus disorder prediction 1 43 - -
Vian3g01280 1506 Pfam Helicase conserved C-terminal domain 1149 1273 IPR001650 -
Vian3g01280 1506 Gene3D - 1131 1365 IPR027417 -
Vian3g01280 1506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 779 962 IPR014001 -
Vian3g01280 1506 Coils Coil 49 76 - -
Vian3g01280 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 978 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01280 Vian-Chr3 14123339 14150787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01280 682 1326 RAD5 or RAD16-like Gene Family AT5G43530 22.423 3.83e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian3g01280 SNF2_N 7.1e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01280 K10779 - gmx:100794911 2501.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01280 3 14123339 14150787 Vian3g01280 3 14123339 14150787 ECH