Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01266 ATGTGCGAAGCGCTGAAGACGCAGTACCAGGTAAACGAGGAGATCGGTCGTGGACGGTTCGGAACCATCTTCCGCTGTTTCCACCCTCTCTCCAACGAACCCTACGCCTGCAAGGTCATCGACAAGTCTCTCCTCGCCGATTCCACCGACCGCGAGTGTCTCCAGAACGAACCAAAATTCATGACCCTTCTCTCTCCTCACCCTAACATCCTTCAAATCTTCGATGTCTTCGAGGACGACGATTATCTCTCCATCGTCATGGACCTCTGCCAGCCCCACACGCTCTTCGACCGCATCGTTAACGGCCCAATCTCCGAGACCCAGGCGGCCGTCCTCATCAAGAGCCTTCTCGAAGGCCTGGCCCACTGCCATCGCATGGGCGTGGCCCACCGCGACATCAAGCCCGACAATGTTCTCTTCGACTCCGCGGATAATCTCAAGCTGGCGGACTTCGGGTCGGCGGAGTGGTTCGGCGACGGGAGCACCATGAGTGGCGTGGTGGGGACGCCGTACTACGTGGCGCCGGAGGTTGTGATGGGAAGGGAGTATGATGAGAAAGTTGATGTGTGGAGCTGTGGTGTTATTTTGTATATAATGTTGGCAGGGATTCCCCCTTTCTATGGAGACTCTGCTGCCGAGATCTTTGAGGCTGTGGTTAGGGCTAACCTTCGCTTCCCTTCTAGAATCTTCCGGAATGTCTCCCCCGCCGCCAAGGATCTCCTCAGAAAAATGATCTGTCGAGACCCTTCTAGAAGGTTCTCAGCAGAACAAGCCTTGAGACATCCTTGGATCTTGAGTGCTGGTGACACAGCTCAGTTGACTTGA 825 0.5539 MCEALKTQYQVNEEIGRGRFGTIFRCFHPLSNEPYACKVIDKSLLADSTDRECLQNEPKFMTLLSPHPNILQIFDVFEDDDYLSIVMDLCQPHTLFDRIVNGPISETQAAVLIKSLLEGLAHCHRMGVAHRDIKPDNVLFDSADNLKLADFGSAEWFGDGSTMSGVVGTPYYVAPEVVMGREYDEKVDVWSCGVILYIMLAGIPPFYGDSAAEIFEAVVRANLRFPSRIFRNVSPAAKDLLRKMICRDPSRRFSAEQALRHPWILSAGDTAQLT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01266 274 SUPERFAMILY Protein kinase-like (PK-like) 6 266 IPR011009 -
Vian3g01266 274 CDD STKc_CAMK 8 263 - -
Vian3g01266 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 267 - -
Vian3g01266 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01266 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01266 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vian3g01266 274 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Vian3g01266 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Vian3g01266 274 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
Vian3g01266 274 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 274 - -
Vian3g01266 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vian3g01266 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01266 Vian-Chr3 14022892 14023811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01266 9 267 EF-hand Containing Proteins AT5G19450 44.106 7.76e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian3g01266 Pkinase 1.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01266 - K08794 gmx:548089 518.079