Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01239 ATGTTCAAATTCTTGAAAGAGGTGGTGGCTGGATCTGGCACCGGCCTCAAAGATCTTCCATACAATATCGGTGAACCTTATGCTTCTGCTTGGGGTTCGTGGCTTCACTTTCACGGCACCTCCAAGGATGACGGTTCTCCAGTGTCAATATTTTCTCTGTCTGGGAGCAATGCTCAGGATGGACATTTAGCTGCGGGTCGTAATGGTGTTAAGCGTCTACGCACTGTTAGGCATCCGAATATTTTATCTTTTCTTCACAGCACAGAGGTTGAAACTGTTGATGCTGGTTCTCCCAAGGTTACAATTTATATGGTGACCGAGCCTGTGATGCCGCTGTCAGACAAGATTAAGGAGCTAGGTCTTGAAGGTACCCAAAGGGATGAATATTATGCTTGGGGCCTGCATCAAATAGCAAAGGCTGTGAGCTTCTTAAATAACGATTGTAAACTCGTTCATGCTTATGTTTGCTTGGCAAGTGTTGTTGTCACACAAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTGTCCGAGTTTGATGGGAATAACGAAACTTCCTCTGGGCAAATGCTGCAATATGCATGGCTTGTTGGAACACAGTACAAACCAATGGAACTGGCAAAATCTGACTGGGCTGGAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGTCTTATCTATGAGCTATTCTCTGGTTTAAAGTTGGGCAAAACGGAGGAGTTACGCAACACTGTCTTCATTCCTAAGTCTCTGCTTCCAGATTACCAGCGGTTGCTGAGTTCTGCACCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGAGTATTTTCAAAATCAGTTAGTAGACACGATTCATTTCATGGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAAGACACTTTCTTCCGCAAGCTTCCAAATTTGTCAGAGCAACTTCCTCAGCAGATTGTGTTGAAAAAGTTGCTTCCTTTATTAGCTTCTGCTCTTGAATATGGTTCAGCCTCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCTGCACTGTCATCTGAGGAGTTCCGTGTGAAGGTGCTTCCAACCCTTGTTAAGCTTTTTTCATCAAATGATCGAGCTATTCGAGTTGGACTTCTACAACATATAGATCAGTATGGGGAGTCATTATCAGCACAAGTAGTTGATGAGCAGGTTTACCCTCATGTTGCTACTGGGTTCTCTGATACATCCGCTTTTCTGAGGGAACTTACTCTCAAGTCCATGCTAATTCTGGCTCCAAAGCTGTCTCAAAGGACCTTTTCCGGGTCATTATTAAAGCATTTGTCAAGGTTACAGGTCGATGAAGAACCAGCTATACGAACAAATACTACCATCTTGTTGGGAAACATTGCAAACTACTTAAACGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGTGATACCTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCTACCAGTTCCTACTATGACATCACGGAAATTGCAACTCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAATGATGTGCGTTCTAAGGCATTTCAGGCAGTTGATCAATTTTTGCAGATGGCGAAGCAATATTATGAAAAGACGAATACAGCTGAGGCTACTGAGGGAACTAGCACGGAGATCTCTTCAATTCCTGAAAATGCTGGTTTACTTGGGTGGGCTATGAGTTCCTTGACTCTGAAGGGTAAACCTTCTGATCATGCTCCAGTGTCTTCTGTGAGTTCTACGGCACTTACTCCAGCATCTGCTAATGCCAGCTCGGATACTCCTCCAGCAGCCCCTCTTCGTGTAAGGTCTGCGCCAGATTTTGCTGAGCAACCTGTCCCTACTTCCCCAACATCAACAGACGGCTGGGGGGAACTGGAGAATGGACTCGACGAGGAGTGTGAAAATGACAAGGATGGGTGGGATGATCTGGAACCACTTGAAGAAATCAAACCAACTCCAGCTCTAGCAAACATTCAAGCAGCTCAAAGGCGGCCGGTTTCGCAACCTGTTTCGCAGACAAAGCTAGCCACGAGTTTGCAATCCAAAAGTACATCAAAGTTGAGAAAGGATGAAGATGATGATTTGTGGGGTTCCATAGCAGCTCCTGCTCCAAAAACATCCAAATCTTTAAATTTGAAATCAACTGTAACTGATGATGATGATCCTTGGGCTGCCATCGCTGCTCCTGTTCCCACTACTAAGGCCAAGCCCTTGTCAACTGGCAGAGGGCGGAGTGCTAAACCTGCTGCTCCAAAGTTAGGTGCTCAGCGGCTAAACCGGACATCGTCCGGCACCTAA 2382 0.4484 MFKFLKEVVAGSGTGLKDLPYNIGEPYASAWGSWLHFHGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEVETVDAGSPKVTIYMVTEPVMPLSDKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHAYVCLASVVVTQTLDWKLHAFDVLSEFDGNNETSSGQMLQYAWLVGTQYKPMELAKSDWAGIKKSPPWAIDSWGMGCLIYELFSGLKLGKTEELRNTVFIPKSLLPDYQRLLSSAPSRRLNTSKLIENSEYFQNQLVDTIHFMEILSLKDSVEKDTFFRKLPNLSEQLPQQIVLKKLLPLLASALEYGSASAPALTALLKMGSALSSEEFRVKVLPTLVKLFSSNDRAIRVGLLQHIDQYGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTFSGSLLKHLSRLQVDEEPAIRTNTTILLGNIANYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEIATRILPNVVVLTIDPDNDVRSKAFQAVDQFLQMAKQYYEKTNTAEATEGTSTEISSIPENAGLLGWAMSSLTLKGKPSDHAPVSSVSSTALTPASANASSDTPPAAPLRVRSAPDFAEQPVPTSPTSTDGWGELENGLDEECENDKDGWDDLEPLEEIKPTPALANIQAAQRRPVSQPVSQTKLATSLQSKSTSKLRKDEDDDLWGSIAAPAPKTSKSLNLKSTVTDDDDPWAAIAAPVPTTKAKPLSTGRGRSAKPAAPKLGAQRLNRTSSGT 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01239 793 Gene3D Transferase(Phosphotransferase) domain 1 109 269 - -
Vian3g01239 793 MobiDBLite consensus disorder prediction 600 621 - -
Vian3g01239 793 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Vian3g01239 793 MobiDBLite consensus disorder prediction 653 670 - -
Vian3g01239 793 Gene3D - 282 561 IPR011989 -
Vian3g01239 793 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01239 793 SUPERFAMILY ARM repeat 285 551 IPR016024 -
Vian3g01239 793 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Vian3g01239 793 MobiDBLite consensus disorder prediction 596 670 - -
Vian3g01239 793 SUPERFAMILY Protein kinase-like (PK-like) 37 289 IPR011009 -
Vian3g01239 793 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 10 769 - -
Vian3g01239 793 MobiDBLite consensus disorder prediction 689 711 - -
Vian3g01239 793 MobiDBLite consensus disorder prediction 688 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01239 Vian-Chr3 13727483 13741564 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Vian3g01239 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01239 K08876 - gmx:100792884 1385.93