Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01234 ATGGAGGAAGTGGAGATAACAGAGGAAGAAGACGAAGTTGTGGTTGCTCCAACTAACTTTTCAATGGTGGAAGAGGGTATTTTTCGCAGCAGTTTCCCTCGATCTTCAAATTTCTCTTTTCTTGAAACTCTGAATCTTCGTTCCGTCGTATATTTGTGCCCCGAACCCTATCCACAGCAAAATCTACAGTTTCTTCAATCGCAAAATATCAAGTTCTTCCACTTTGGTATTGAAGGCAAAACGGATCTTTCTGTGCCTGCCGTAAAGGATTTGATCTTTGAGGCCGTCAAAGTTTTGATTGACGTGAGAAATCACCCAGTTCTAGTCCACTGTAATCAAGGAAAGCATCGAACTGGTTGTGTTATTGGATGCTTCAGAAAACTGCAGCGTTGGTGTCTATCTTCTGTGTTTGAGGAGTACAAGAAATTTGCTGGAGCTAAATCCAGAACGACTGATTTAAGTTTCATAGAAACGGTTGATCTCTTAAACCTGAGAAAGTGTCTTAACAGCATCATATACCGATACCTAGGACATTCTTCAAAGAAACGCAAGTTGCTGTACAGAGATGATAATCTCAAGGTCCACTTGACATCAGTTTAG 600 0.4083 MEEVEITEEEDEVVVAPTNFSMVEEGIFRSSFPRSSNFSFLETLNLRSVVYLCPEPYPQQNLQFLQSQNIKFFHFGIEGKTDLSVPAVKDLIFEAVKVLIDVRNHPVLVHCNQGKHRTGCVIGCFRKLQRWCLSSVFEEYKKFAGAKSRTTDLSFIETVDLLNLRKCLNSIIYRYLGHSSKKRKLLYRDDNLKVHLTSV 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01234 199 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Vian3g01234 199 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Vian3g01234 199 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Vian3g01234 199 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Vian3g01234 199 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 172 - -
Vian3g01234 199 FunFam probable tyrosine-protein phosphatase At1g05000 13 163 - -
Vian3g01234 199 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Vian3g01234 199 Gene3D Protein tyrosine phosphatase superfamily 14 162 IPR029021 -
Vian3g01234 199 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 157 IPR029021 -
Vian3g01234 199 Pfam Tyrosine phosphatase family 14 160 IPR004861 -
Vian3g01234 199 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 168 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01234 Vian-Chr3 13688765 13689827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01234 4 194 Protein tyrosine phosphatase (PTP) family AT3G02800 59.162 2.60e-91 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01234 K18045 - gmx:100808199 323.553