Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01233 ATGTCCACTTCCATTGAAAACAAGCACCATCAAATCAATGAAACTACAGCTATCAATTCTGCAGAAAGGGGCTTTCATAAGGAGAGAAGGGATTTGGATTTTGATTTGAATGAACCTATGATTAATATCAATTTGGTTCCAAATTCTCAGAAAGCTGTTGAACAAGTGCATTCGTCGAATTCGAATGATGTGAAAAAGGTGGAGTTTCCCTTTGATCTTAATGCAAAATTTGATGAAGAGGATCAAATTTCTTGCTCCAAGGAAGTTGGTGGCTGGAGTGAAACAATTCAACCTTTACCTTCCTCTTATTTGGAGGAAGTTGATGAAGAGCATGTTCTTCCAACAGACAATGGTAACGAGGACAGATCCAGTGTTGTCGGGGGAGCATCAAACACTTCCCAGAACAGGAAGAGAAAGAGATCGATTGAGGAATGTGAGAAAGGTAGAGGGAAGGGTTTTCGTAGAGAAAATGTGGAAGTGAAGATTAAGAGACAAAACCAGAATACAGTAGATGATGGCTATCACTGGAGAAAGTATGGTCAGAAGCCTATTAAGGGAAATTTATTCCCAAGGGCCTACTACAAATGCACAACTGTTGGATGTTCAGTAAAGAAGCACGTGGAGCGTGATTCGCGTAACCAAAAAAACTTGATTAGTACTTATGAGGGAAGACACAATCACGAACAACCAAACCCTAGCAAACAATATATACATGATGAAGAAGATGAACAACTTGCTGCTGTTGCTGCAGCCAATGCCCTATTGACTTTTGGATCACCCGGAACTAGGAACTTCTTCAATACCCCAAAGCCTCCAGTTCACACTCTTCAACTACTTCCTAATCACACAAATCCTGAATTTTTCAATATGTTCATCAGATCCAACCCTTTTGGAAGTTTCAACTATAACATGAATATTGGGTCTTCCTACACTCCCCCAATGCATTACTCTTCTTTCTTGAATAATGTCATTACCATGCCTTATGGACTTAACCTTGCTCGTTATGTTCCACCTCCATTTAACATACCTTTTTCTTTTGAAGGTTTTTCTCAGGATTGGATGAATGCTAATGGGTCCAGTTCAGTGTTTCGTTGCAGAGAAACAAGTGCAAGAGATCGTAGCTGCCACTAG 1131 0.4005 MSTSIENKHHQINETTAINSAERGFHKERRDLDFDLNEPMININLVPNSQKAVEQVHSSNSNDVKKVEFPFDLNAKFDEEDQISCSKEVGGWSETIQPLPSSYLEEVDEEHVLPTDNGNEDRSSVVGGASNTSQNRKRKRSIEECEKGRGKGFRRENVEVKIKRQNQNTVDDGYHWRKYGQKPIKGNLFPRAYYKCTTVGCSVKKHVERDSRNQKNLISTYEGRHNHEQPNPSKQYIHDEEDEQLAAVAAANALLTFGSPGTRNFFNTPKPPVHTLQLLPNHTNPEFFNMFIRSNPFGSFNYNMNIGSSYTPPMHYSSFLNNVITMPYGLNLARYVPPPFNIPFSFEGFSQDWMNANGSSSVFRCRETSARDRSCH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01233 376 MobiDBLite consensus disorder prediction 136 150 - -
Vian3g01233 376 Pfam WRKY DNA -binding domain 171 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01233 376 FunFam WRKY transcription factor 158 231 - -
Vian3g01233 376 SUPERFAMILY WRKY DNA-binding domain 165 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01233 376 Gene3D WRKY domain 155 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01233 376 MobiDBLite consensus disorder prediction 1 20 - -
Vian3g01233 376 ProSiteProfiles WRKY domain profile. 165 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01233 376 MobiDBLite consensus disorder prediction 109 150 - -
Vian3g01233 376 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 235 IPR044810 GO:0003700
Vian3g01233 376 MobiDBLite consensus disorder prediction 118 135 - -
Vian3g01233 376 SMART WRKY_cls 170 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01233 376 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01233 Vian-Chr3 13685015 13687971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01233 168 281 WRKY Transcription Factor Family AT2G38470 44.348 2.65e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian3g01233 WRKY 3.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01233 K18835 - var:108323080 671.389