Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01232 ATGTCCGCTTTCGTGGAAAACAATAGCCTCCAACACGATCACACCAACCAAATCTCAGAACCCAACTTTCATGGTTTATCTTCCAAACCCAATTGCAGTCAGCAGAAAAGGGTTATCGATTTCGATTTAAATGAACCCGAAATCGATGCAATGGCTTCTCCTCCTCTTATGGACAACAATTTGGTTCCAATCTCTCAGGTTTCTGCTGATAATGTCCCTGTGGCAACGGAAGGTTGCCAAACTCTTGCTACAACATCGGATTTGTTACCTCCTACACAAGTTATTGAACAAGTGCATTCATCCAATTCCAATCATGACATAACAGTGAAGTTTCCATTTGATCTTAATGCTGAATTTGATGAGGAGGATTCAATTTCTCGCACTGAGGAAGCACGTCACAAAGTTGTGGAAACCATTCCAACTTTACCTTCTACTCATTCGGAGCTCACACCACAAGATGTTCCTCCTACAGACATGGACAATGAAGATAGAGCAAGTGTTGTCGAAGGAGGAACAGCTACCTCTGAAACCAGGAAAAGAAAGAAATCTACAGAGGGAGAATATGAAAAAGTGCATGCGAGGTCATTTCGTGGGAAAACATTGACTGTAAATGTTGAAAGCCGAAGAAGGACCATCGTGGATGATGGCTACCGTTGGCGAAAATATGGCCAAAAAACTATAAAGGGAAATTTGTTCCCTCGGGCCTACTACAAATGCACAAGTTCTGGGTGTTCTGTAAGGAAGCACGTGGAACGAGATTCGCGAAACAGAAAGAACGTAATCACTACTTACGAGGGGAAACACAATCATGAACAACCATCCCCTAAGAACCCTAATGAGAAACATTATGCAGAAGAGGACGATGAAGATGAAGAAGATGACACAGAAGAAGTTGCTACTGCTGCATCCAATGATCTATGGAATTTTAGATTATCTGAGAGTATGAATTTTCTCAACACTCCACAGCCTGCACAACATCGACTTCACACTCTTGAGCTCTTTCGTAATGGGTCTGTTTGGCCTTTTGGAAGTTTCAACATGAATATTACGTCTTCTTCTTACACCACTCAAATGCATTATTCTTCTTTCTTGAACAGTACCAACACCATGCCTTACCGTTTCTATGGACTTGATCTCAACCGTTTTGCTGCCCCCCAAACTGAGTTTCCAATGCCACCACCCTTTAACATTCCTTCTTCTTCTCAAGTTTTTTCTATTGGCTCCAGTTCAGTCTTTCCTTTGAGGGGTGCAATATATCGCAGATGGTAA 1269 0.4208 MSAFVENNSLQHDHTNQISEPNFHGLSSKPNCSQQKRVIDFDLNEPEIDAMASPPLMDNNLVPISQVSADNVPVATEGCQTLATTSDLLPPTQVIEQVHSSNSNHDITVKFPFDLNAEFDEEDSISRTEEARHKVVETIPTLPSTHSELTPQDVPPTDMDNEDRASVVEGGTATSETRKRKKSTEGEYEKVHARSFRGKTLTVNVESRRRTIVDDGYRWRKYGQKTIKGNLFPRAYYKCTSSGCSVRKHVERDSRNRKNVITTYEGKHNHEQPSPKNPNEKHYAEEDDEDEEDDTEEVATAASNDLWNFRLSESMNFLNTPQPAQHRLHTLELFRNGSVWPFGSFNMNITSSSYTTQMHYSSFLNSTNTMPYRFYGLDLNRFAAPQTEFPMPPPFNIPSSSQVFSIGSSSVFPLRGAIYRRW 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01232 422 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 78 293 IPR044810 GO:0003700
Vian3g01232 422 MobiDBLite consensus disorder prediction 1 31 - -
Vian3g01232 422 Gene3D WRKY domain 198 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01232 422 MobiDBLite consensus disorder prediction 284 299 - -
Vian3g01232 422 ProSiteProfiles WRKY domain profile. 208 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01232 422 SUPERFAMILY WRKY DNA-binding domain 210 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01232 422 SMART WRKY_cls 213 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01232 422 Pfam WRKY DNA -binding domain 214 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01232 422 MobiDBLite consensus disorder prediction 263 283 - -
Vian3g01232 422 MobiDBLite consensus disorder prediction 263 299 - -
Vian3g01232 422 FunFam WRKY transcription factor 202 274 - -
Vian3g01232 422 MobiDBLite consensus disorder prediction 142 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01232 Vian-Chr3 13678102 13682044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01232 175 276 WRKY Transcription Factor Family AT5G56270 52.941 5.29e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian3g01232 WRKY 2.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01232 K18835 - vun:114191352 568.926