Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01226 ATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGACAATGATGATTTTCCATCAGTTCCGCCAGGTTTTGAGTCATATACATCTTTCTCTCTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAACATGATCAGTTGTTCAGCCTCAACAAGTGCTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGAAACTGCAAAGGTTCCTAGATCCCTTCGAAGAAGACCGTGGATTAATTATGGACAGTATGAGAACCATTCAGAAGAAGACTCTGACTGTGAGCGGCTTGATCAAACTTTGTCCTCTAGGGCTTGTCTTCCTCGAGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTATTGCCAGATGGCGACCTGAAGATGCTCGTAGGCCAAATATTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGGGCTGAGCCATATGGAATTTGCCGCATTGTTCCACCTTCTTCTTGGAAACCCCCCTGTCCTCTCAAGGAAAAAAGTAAATGGGAGGGTTCTAAATTTTCTACACGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAAATGTCAAGGGTTCAAAGTAATATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGCACTAGAAGAGGACCCAATACAGCATTTTGTGAAGTGGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAGCATTTCAGAGATATGCAGAAGATTTTCAGCTCCAATACTTCAGAAAAAATGAGAACGTATCTCATTTGGGTGGTAATACAACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAGCATTGAAGGTGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGAATTTTTGGGAGTGGTTTCCCTAGTAAATCTAGTCAGCTAGGTTCTGCTTCACATGAAAAATACATAAAGTCTGGCTGGAATTTAAATAACTTTGCAAGGCTTCCTGGATCTCTGCTCTCTTATGAGAGCAGTGATATATCTGGTGTTTTAGTGCCGTGGTTGTACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTTGAAGACCACCATTTATATTCATTGAACTACATGCATTGGGGAGCTCCAAAATTGTGGTATGGAGTCCCTGGGAGAGATGCCTGCAAATTAGAAGAGGCTATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAACTTTCTCCTTCTATCCTCAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCCGGGTTCAATTGCGGTTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGTTGTACCAGGAACAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTTCGAGCTCAATGGGAGCTTAATTTGCTAAAGAAGAATACTTTAGATAATCTACGATGGAAGGATGTCTGTGGAAAGGATGGCTTTTTTGCCAAAGCACTTAAGATGCGTGTTGAGATGGAGCGAGCAAGAAGAGAATTTCTCTGCAGTTCTCTACAGGCATTAAAAATGGAGAGTACCTTTGATGCTATGGATGAAAGGGAATGTAACATATGCTTTTTTGATTTACACCTATCTGCAGCTGGCTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGCTTTGTTCATGCTCTTGGGATTCCAGATTTTTTCTCTTTCGGTATGATGTTGCTGAACTAAATATTCTGGTGGAGGCATTGGAAGGAAAATTAAGTGCAATCTACAGATGGGCAAAATCAGATCTTGGGCTGGCACTATCATCTGATGTTTCATCAGGGAAGGAAACAATACTTAAAGAATTGAAACCACATTCATCCAGTTTGTCTCATTCTTCCAGGGCCACTTTGAATAAAGAGACGGCTTTGCATCCACCAAATAAATATATTGATGATTCTCAATTGATTGACGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGAAAATCAGCTGAAGCTATTTCATTTTTGAGTTCAACGAAGGACTTGCTAACATTTAACAGCTCAAAACCTACATCTGATATTCCTAATCATAAGATCTGTGTTAGTAAGGAAGAATCTGTCATTTGCAGCTCAAAGAGGCAAACACCTGGTTGTCAATTGTCTCAGGAGGATACATCGTATGCTTTATCTACTCTAGCTCAACAAGGAGGTGAGAAAAGTTCACTTTACAGGCATAACAACGTTATACTTCTTAGTGACGATGAAGAAGACGAAAAGATGTCTGATTCAAATAGAAGGAAGGAACTTTCTTCTATGCTTGTAGGTCCTGGAGATAAATCAAGCCCATTTAACAATATAGAAAGTACAAACTTGACCATTTCTGTGACAGATACTGCTGTGATGGGTGAAAGGGATGCTATGACATTACCCCATGAAAATATGAGTTCTGATTCAATTCCGTCTTTGCGTGTGAAACAAGAATGTCATGAGTACACAGGAACAGTTCTAGCCTCTACCCCACTAGATCTTTCTTGTCATATTGGTCTTACAAGTGCACAATGTACTAAAAATATTTCAGCTCCTTCAAAAGTAGAAGCAAGTGATCATTGTTTGGAAAGTTTGGTGATGTCTCCTCTGAACCTACAACTTTCTGGCACTAAGGTTAAGACTGAAGATAATCACGAAAAATTTGGAGGATGTTCCACTTCTAATGTAGCAGACAATGCGAGAGCTGTTAATGGAAACTTTTCTTCTGGTCCAAACAATTTCCGACAGAAAGGTCCTCGGATAGCGAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGGGTTGTGCTTTCTGGAAAGTCTTGGTGTAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGAGTTAGATACATAAATGTCTCAGATCCATCCAGTATGTGTTACTATATTTCAGAAATACTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTTCTTAGAAAGTTGTCCAAGTGAGGTCTTCATCCATATGTCAGCTGCAAGATGCTGGGAGCTCGTCAGAGAGAAAGTGAATCAAGAAATTGCCAAGCAACATAAGCTGGGAAGAAAGGGCCTTCCTCCTTTACAGCCCCCGGGTAGCCTTGATGGCTTAGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAAGCGCTGGATCGAAGTCGAGTGTGTAATGAATATTGGGACTCACGGCCGTACTCCCGCCCTTTAGGACAGATTTCACAATCATGCCAAAGCAGTGTTAGTGGTGGCAGTGGTCAAGGTGTTCTCTTGAATAAGCAAATTCCCGTTGATGTTGTTGCAGTATTAAGGAGCCTATGTAAAAAGGCTAATGCAGAAGAATTGAACTCGTTGTACAGCATTCTTAGTGAAAGTAGGCCACAGGCTGACAGGAGCCAAATTGCGCAATTTCTTAAAGAAGAGATGCACAAATCACAACCACCCTAG 3771 0.4158 MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMISCSASTSASESPSTQVENDVQVRETAKVPRSLRRRPWINYGQYENHSEEDSDCERLDQTLSSRACLPRGVIRGCPDCSNCQKVIARWRPEDARRPNIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSKWEGSKFSTRVQRIDKLQNRDSMRKMSRVQSNMKRKRRRCTRMGVDNGTRRGPNTAFCEVERFGFEPGPEFTLEAFQRYAEDFQLQYFRKNENVSHLGGNTTILNGTSEPSVESIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQLGSASHEKYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGRDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKDGFFAKALKMRVEMERARREFLCSSLQALKMESTFDAMDERECNICFFDLHLSAAGCRCSPDRYACLDHAKQLCSCSWDSRFFLFRYDVAELNILVEALEGKLSAIYRWAKSDLGLALSSDVSSGKETILKELKPHSSSLSHSSRATLNKETALHPPNKYIDDSQLIDVPIENQANSKDQSYFQQRKSAEAISFLSSTKDLLTFNSSKPTSDIPNHKICVSKEESVICSSKRQTPGCQLSQEDTSYALSTLAQQGGEKSSLYRHNNVILLSDDEEDEKMSDSNRRKELSSMLVGPGDKSSPFNNIESTNLTISVTDTAVMGERDAMTLPHENMSSDSIPSLRVKQECHEYTGTVLASTPLDLSCHIGLTSAQCTKNISAPSKVEASDHCLESLVMSPLNLQLSGTKVKTEDNHEKFGGCSTSNVADNARAVNGNFSSGPNNFRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVSDPSSMCYYISEILDAGRGWPLFMVFLESCPSEVFIHMSAARCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGLEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPLGQISQSCQSSVSGGSGQGVLLNKQIPVDVVAVLRSLCKKANAEELNSLYSILSESRPQADRSQIAQFLKEEMHKSQPP 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01226 1256 SMART JmjN_1 147 188 IPR003349 -
Vian3g01226 1256 MobiDBLite consensus disorder prediction 843 875 - -
Vian3g01226 1256 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Vian3g01226 1256 ProSiteProfiles FYR domain FYRC motif profile. 1082 1172 IPR003889 GO:0005634
Vian3g01226 1256 SMART cupin_9 360 523 IPR003347 -
Vian3g01226 1256 SMART fyrn_3 1036 1080 IPR003888 GO:0005634
Vian3g01226 1256 Gene3D Cupin 133 507 - -
Vian3g01226 1256 MobiDBLite consensus disorder prediction 37 75 - -
Vian3g01226 1256 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Vian3g01226 1256 Pfam F/Y rich C-terminus 1085 1168 IPR003889 GO:0005634
Vian3g01226 1256 SUPERFAMILY Clavaminate synthase-like 357 550 - -
Vian3g01226 1256 Gene3D - 1029 1166 - -
Vian3g01226 1256 FunFam Putative lysine-specific demethylase JMJ16 1028 1166 - -
Vian3g01226 1256 Pfam jmjN domain 149 182 IPR003349 -
Vian3g01226 1256 MobiDBLite consensus disorder prediction 45 69 - -
Vian3g01226 1256 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Vian3g01226 1256 PANTHER LYSINE-SPECIFIC DEMETHYLASE 141 1128 - -
Vian3g01226 1256 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Vian3g01226 1256 ProSiteProfiles FYR domain FYRN motif profile. 1022 1080 IPR003888 GO:0005634
Vian3g01226 1256 Pfam F/Y-rich N-terminus 1035 1077 IPR003888 GO:0005634
Vian3g01226 1256 SMART fyrc_3 1086 1180 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01226 Vian-Chr3 13587238 13596014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01226 2 1251 JUMONJI Transcription Factor Family AT1G08620 55.495 0.0 1258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian3g01226 JmjC 7e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01226 K11446 - gmx:100800271 2221.05