Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01220 ATGAAAGGGGGGCGATCACATCGCCCTCAGAGCTCTGACCCACCGGATGAGTGGGTGGACGGGTCGTGGACGGTGGATTGCATCTGCGGCGTGACCTTCGATGACGGCGAGGAGATGGTGAAGTGCGACGAGTGTGGCGTGTGGGTCCACACGCGCTGCTCGCGGTACGTGAAGGGCGACGACACCTTCGCCTGCGACAAGTGCAAGGCCAGGCACAACAACAACCCGGAGGAGACCGAGGTGGCGCAGTTCCTCGTGGAACTCCCCACCAAAACCATCTCCATGGACAACAAAAAGGCCCTACCGTCTCGGCCCAGGCTTTGGACCGATAAGCCCATCCAGGAGCGGGTCCACGTCCAGGGCCCACCCGGAGGCGACCCTTCCATCTTTTCCGCCACCTCCGTCTCCTCGATTTTCTCCCCTCACCTCTGGAAGGCCTGCGGGTACGTTCCCAAGAAGTTTAATTTCCAGTACAAGGAGTTTCCCTTCTGGAGCGATAACGATGATGATAAGGATAACGTTAACGAGAGTTTACAAGCACAAACAGAAGCTCAACCACAGGCACAAGATAACAACAAGAACGGGGCTGGGGCTCTTGTTTATTTGTCTAAAGACGGTGATAATAATGGTGATGCTCTTGTGTTGGACCCTTCCTCTGTTGATGCGAGATCTGGTCACGCCAAGGAAACCGAAACGGGCAAGTTTGGGAGCGAGGATGTGCCGCCTCGTGTCCACAGTGAGGTGAAGAAAGAGAGGACTCTGCTCAGACCTCCTGTTGTTCATAACAGTAAGCGCAGCAAAGGGGATTTCGGGTCTTCAAATTCAAAAGACCGGAGCGGGAAGAAGCGGGCTAGGTCTACTTCTGACAGAGAGGTGGATCCCAGGAGGAGAACTCTGCATTCTTCTAAATCAGTATTTACAACCACTGGTGATGCAAAACAAGCGGACTTTTATGAGGACAGAGGACCAAAGATTTTAAAGGCTGACACTAGGAGCATAAAGAATAAAAACTTAAAAGAGACCGTTGTTCAAGAATGTGTTTCTGATGATTATTTGGCTGCTGATACCATCATGGAGGAGCCAAATAATAACTTAGCAACTACGGAGGACTCTTCGGAACCATTATATCCTGACACGACTAGGCATGGTGTTTCTGTTGTAGACGTTCCATCAGAAGAGAAGCCTAATCATAAACCTCCTACTGTGGTGGAGATGTCTTCTAAGACTGACGATGCTGTTACATCGGCTTTAAAGCAGAATAATGTTGGAAATGCTTCAGCTAAAGAAAAGGATGGGGATTGCTCAGTAGCTGATAATGCAGATGATAGTTTAGTAGTCAGAAGTGCTGCAAGTCCTCACGCAGAAGGTTATTGCGGTTCTGCACCAGAACTTGCAGATAACCAATTTTCACAAGAAATTGACCGCAACAAGCTAACAAGCTCTACAAAATGCAAAGTTAAGATGAAGAGGGAAGACGACATTGATAATTTTAAGAAGCCCTCAATTTTTCATCCTTCTCCTATCAGTGATCTTAAAAACAATGAAAAACTATCTGATCACAAATCTGATGTTGAAGTGAATGATGCACCAGTTCCTAGTTTACCATCATGTGAAAATAAGGTCGGCAGTGTTGACATTTCATCAGAAGTAATCCCTGCTGATTATATCAATAAGCCCAATGAATTTTCTGGTGATATTTGTCCTAGAAAGAAAGAACAGGAGGGTTATGAAGGTTCCTTGGAAACACAAAAGGTATTTTCTGAAATCAAAGATGGTTCAGATTCTGTTAAAGATCCTTCAAAATCTGAAGCACTTGGATGTCCAGCTAAAGTGCTAGTATGTGTTGGAAAGTCATCTCCAACTTCGTCAACCATGAACTCCAAATCATTGGGTCATGATATCAAATCTGAAGATACCGAAACAGCTAATCCTTTTACGAAGCATGGAGCGATGACTGATTCTAGTGTTCAGATAAAGAATGAAAACTGTACAAGTAATGTTGCCAGGGATGAAAATCCAAAGAAGTCTGTAAGAGAGCGACCAAAATCCTCCTTGAATTCCAATTCAAAGGGATTGCATTCAAGCAGGAGTGTGCATAATTCTGTCTCCAAGCAAGCAAATTCAGATGTAAGGGATTCTGTTCCAGTATCTTCCAAGTCTTTGATACATCAGACTTCAAGTATATCAGGCTCTAGTGAGCCCAATGTATCATTGCACAATCAGAAGGTTCAAGTGCAGAATAAGATTTCATCTTCAGCACCACAGAAAGTTGAAAAAGTTAACCAAACAAACATTGCCACTTCCTCTAAGTTGAACCAAGGTCATGTGACATCAATGAATCCTTCTCCAATATCAAATTCTTCAATGTTGAGTGATGAAGAGCTCGCTCTGCTATTGCACCAAGAACTGAATAGTTCACCCCGTGTACCCCGAGTACCCCGAGCACGCCATGCAGGTAGCTTGCCCCAGCTGAGTTCTGCTAGTGCTACAAGCATGCTAATGAAGCGAACATCAGGTGGAGGAAAGGATCATTATTTGGTATCTAGACGAAAACACAAGGATGCATCTAGAGATGGGTCTGGCAGTTCTCGTGAGCTGGAAGATGAAGCTAAAAAGGTAGAGAAGGAGAAGGGTCCAACCTCTTCTGATCAGAGGAAACAAGATATGTCATATATGGAGGATGCTCCTGCGAGGGAAGAAGGCCCTGCATCTATGACAGCAGCAAACTCAATCACAAACAACATTGTTTCTTCCACGTCTGCAATAGCAAACAGTGATCCATCCTCCCCTCCAGAGGATCAGAATTTATCATCCATGCAAAACTCACCTAGGAATATCTCTGATGATGATACAGCGACTGCTGGAAGGCCAGCTCATCACACCTTACCTGGTTTAATCAATGAAATTATTATGAGCAAAGGCAGGCGCATGACATATGAGGAACTCTGTAGTGCTGTGCTACCGCACTGGCATAACTTGAGGAAACACAATGGAGAGCGTTACGCATACTCAAGTCACTCCCAGGCTGTTCTTGATTGTTTGAGGAACCGGCAAGAATGGGCAAGGTTGGTTGATCGTGGTCCAAAGACAAATTCTAATAGAAAAAGGCGTAAGCTGGAGGCTGAAGAATCTGATGATAATGGATATGGCAAGGGAAGAACTGCAAAAGAGACCGAAGGGAAGAACTTTGAGTTGCAAAAGGAAGAGTTCCCCAAAGGCAAGCGTAAAGCTCGAAAACGCAGACGCCTTGCTCTTCAGGGAAGAGCAGTGAAGGATGTCAGGAGGAGACAGAAAACTGACTCACTAACGGATGAGGATGTTGGTCCATTCTCCAATTCTAGTGAAGAGAGCATGTTCAGTGAAGATGAAATCCAGGTTGGCAGAATATGCCCAGCAGGAAGTACATCAGATGAGGCAGGTAGTGCCTAA 3429 0.4561 MKGGRSHRPQSSDPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDTFACDKCKARHNNNPEETEVAQFLVELPTKTISMDNKKALPSRPRLWTDKPIQERVHVQGPPGGDPSIFSATSVSSIFSPHLWKACGYVPKKFNFQYKEFPFWSDNDDDKDNVNESLQAQTEAQPQAQDNNKNGAGALVYLSKDGDNNGDALVLDPSSVDARSGHAKETETGKFGSEDVPPRVHSEVKKERTLLRPPVVHNSKRSKGDFGSSNSKDRSGKKRARSTSDREVDPRRRTLHSSKSVFTTTGDAKQADFYEDRGPKILKADTRSIKNKNLKETVVQECVSDDYLAADTIMEEPNNNLATTEDSSEPLYPDTTRHGVSVVDVPSEEKPNHKPPTVVEMSSKTDDAVTSALKQNNVGNASAKEKDGDCSVADNADDSLVVRSAASPHAEGYCGSAPELADNQFSQEIDRNKLTSSTKCKVKMKREDDIDNFKKPSIFHPSPISDLKNNEKLSDHKSDVEVNDAPVPSLPSCENKVGSVDISSEVIPADYINKPNEFSGDICPRKKEQEGYEGSLETQKVFSEIKDGSDSVKDPSKSEALGCPAKVLVCVGKSSPTSSTMNSKSLGHDIKSEDTETANPFTKHGAMTDSSVQIKNENCTSNVARDENPKKSVRERPKSSLNSNSKGLHSSRSVHNSVSKQANSDVRDSVPVSSKSLIHQTSSISGSSEPNVSLHNQKVQVQNKISSSAPQKVEKVNQTNIATSSKLNQGHVTSMNPSPISNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLSSASATSMLMKRTSGGGKDHYLVSRRKHKDASRDGSGSSRELEDEAKKVEKEKGPTSSDQRKQDMSYMEDAPAREEGPASMTAANSITNNIVSSTSAIANSDPSSPPEDQNLSSMQNSPRNISDDDTATAGRPAHHTLPGLINEIIMSKGRRMTYEELCSAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRQEWARLVDRGPKTNSNRKRRKLEAEESDDNGYGKGRTAKETEGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKTDSLTDEDVGPFSNSSEESMFSEDEIQVGRICPAGSTSDEAGSA 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01220 1142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 76 IPR013083 -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 807 903 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 682 758 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 821 835 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 222 258 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 180 309 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 842 895 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 360 411 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 496 540 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 360 374 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 1104 1120 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 920 960 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 1024 1072 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 1086 1103 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 617 758 - -
Vian3g01220 1142 SMART PHD_3 26 69 IPR001965 -
Vian3g01220 1142 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 180 196 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 270 300 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 643 670 - -
Vian3g01220 1142 SUPERFAMILY FYVE/PHD zinc finger 15 73 IPR011011 -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 920 949 - -
Vian3g01220 1142 PANTHER UNCHARACTERIZED 1 1134 - -
Vian3g01220 1142 MobiDBLite consensus disorder prediction 1024 1142 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01220 25 68 PHD Transcription Factor Family AT5G22260 44.681 3.68e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01220 - - gmx:100810855 1774.99