Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01210 ATGCCTCTCACTCTAAGGAATAAGCTCAAGACTCTTTGTTCTTCTGTTGATGCTTGGTCTTATGCTATTTTCTGGCGCTTTCATCCACGCAATTCCTTGTTGTTGACTGTTGAAGAAGCATACTATGAAGAGCATCTGGGAGAAGAGATCGCCGACATGCATCCACAGACTATTGTGGTCATACCTGTCAAAGCATTAGGAGTGATACAGTTTGGATCCAGAAATAAGTTTGTACGAGTGCTAATGGATTGCAGCATAATACTTTCATTACTGCAGATTTTGGAGAGAGTGGAATTTTTAGAGCAAACACAAAGCATGCTCACAGAAATAGATGATGATATGGGTATGTTTGACATGTCAGAAAATGCAGTTTTACCACTGGACTGTGAGAATAATGATTTAAATGGGATGTTGGCTTCCATTTCTTCTGCTAGTCCCAACGATCCTTTCCCTTCTCATTATAAAAACTATGAAGAAGCAATGGCTTCATTTCAAGGAGATTCTTCGTATCTTGGTGACCAATTGAAAGGTACCACGGAAGCACAAGTTGTATGGTCAGACAGGAATAGCATTGATGTGCTTTTGAAGCATAACTCTTCTACTGACAACTTCATTGCCAAAACCCCCTATCTTGGTGTGTGTGATGGTGAATTATCTTCTTTTGATTTGTTGGAGCAACTACTGGTTTCCAGTGTAAGGCCACAAGATGTTGCTGATGCGTGTTTTATGAATGGAAATGCATCTTCTACCAGCAAACTTCCAGTTCAGGATTCGGCACTGGTCCCATTCTGCAGTATGGACAGAGGGTCATTTCAAGGAAAATTGCAAAATTCACTGGATAACCAATATTCAAATCAGTCTAGTGTTGTGACAGACGTTGATTTTTCTTCTACTTCATATGCATTGCATGGACACTCTGAGAGCATAGAGCCAGTTGATATGTCAGAAGAAATTTTGAAGTTCAGCTCCATGGATGATCTTTGCCACTGGTTTGGTCCTTCTTCAGAGGATAGCATCTGCAAAGCGGTAATTGCAATGGATAACAAATTTTCTGAATCAACGGAATTTAATCCCACTTCCTTTGATCTGGTTGGAAGTAGTTCTTTAAATGATGTTTTAGTGACAGGCCTAGCTGGGTATAATTCAAACTCAGATGGGAATGAAACATCTGTGGTTATGCAGAACACTGAAAAAGGTCCGCTGGATTTCATGGAAATTGATTTTAGCTATGAACAAGCCAATGAATGGTGGGGGAATACACTTACACCAGTGGTGAGTGGTGTTACTGATACTGGCTTTTCTGAAAGCATATCAGAGTTGATTTCTGATACTCTGCCAGGCACCCGGAAGAGATTATTCTCAGAGTTGGGAATTGAAGAGCTTTTGAGGGGTGGAGCAAATTACTATCCAGTCAATAGTTCGGAATTTGAGTGTGGATTATCACCCAATAAGAGGCAGACAATAGAATCTTCATCTGTGAATGGAAGTACAAGAGCAGAACTGATGCAACCTCTTTGTGACTTAGACAGCGCAAACAATCTTCCAAGCAAGAAAGATACATTCTCAAAATTACAAGCAGCAACTTGGATTGATGATAGCCATAGCATTAACATTAGAAAGGCTGTTCCAAAACACCCTCAAAAGGCAGAGGAACACGCAAAGCCCACCAAGAAGAGGGCTAGACCAGGAGAGAGCCCTCGACCACGGCCAAAAGATCGTCAGCAAATCCAAGACTGCATTAAAGAATTGAGAGGAATCATCCCAAATGGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCTCACCATCAGATATATGCTTTTCTTACAAAGTGTTCTCAAGTATTCAGACAAGTTACGAGAACCAAATGAGCCGAAGCTTATAGAACAGGAAAATGAAGTGGTTCTAAAAGACAGTGGTGTCGCGGATAGCAAAAACTGTGGCATTACATGGGCATATGAAGTGGGACACGAAACAATGCTATGCCCCATTATAGTTGAAGACATGAGTCCACCAGGCCAAATGCTTATAGAGATGCTTTGTGAGGTGCAGGGTATATTCCTTGAGATCATTGACATAATTCGGGGTTTTGGACTGAATATATTGAAAGCCAAGATGGAAAGAAAGAAGAACAAACTATGGGCACGCTTTATTGTTGAGGCAAACAGACATGTGACAAGGATAGATGTGTTTTGGTCCCTTATCCATCTTCTACAACAGACAAACACCTCCGGCATTGATTCTTCCAACAAGAATTGGGATGCTCTTCATGCCAATAGCATCAAATCGTAG 2292 0.4097 MPLTLRNKLKTLCSSVDAWSYAIFWRFHPRNSLLLTVEEAYYEEHLGEEIADMHPQTIVVIPVKALGVIQFGSRNKFVRVLMDCSIILSLLQILERVEFLEQTQSMLTEIDDDMGMFDMSENAVLPLDCENNDLNGMLASISSASPNDPFPSHYKNYEEAMASFQGDSSYLGDQLKGTTEAQVVWSDRNSIDVLLKHNSSTDNFIAKTPYLGVCDGELSSFDLLEQLLVSSVRPQDVADACFMNGNASSTSKLPVQDSALVPFCSMDRGSFQGKLQNSLDNQYSNQSSVVTDVDFSSTSYALHGHSESIEPVDMSEEILKFSSMDDLCHWFGPSSEDSICKAVIAMDNKFSESTEFNPTSFDLVGSSSLNDVLVTGLAGYNSNSDGNETSVVMQNTEKGPLDFMEIDFSYEQANEWWGNTLTPVVSGVTDTGFSESISELISDTLPGTRKRLFSELGIEELLRGGANYYPVNSSEFECGLSPNKRQTIESSSVNGSTRAELMQPLCDLDSANNLPSKKDTFSKLQAATWIDDSHSINIRKAVPKHPQKAEEHAKPTKKRARPGESPRPRPKDRQQIQDCIKELRGIIPNGGKCSIDSLLDLTIRYMLFLQSVLKYSDKLREPNEPKLIEQENEVVLKDSGVADSKNCGITWAYEVGHETMLCPIIVEDMSPPGQMLIEMLCEVQGIFLEIIDIIRGFGLNILKAKMERKKNKLWARFIVEANRHVTRIDVFWSLIHLLQQTNTSGIDSSNKNWDALHANSIKS 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01210 763 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 560 609 IPR011598 GO:0046983
Vian3g01210 763 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 56 752 IPR043561 GO:0003700|GO:0006355
Vian3g01210 763 MobiDBLite consensus disorder prediction 537 575 - -
Vian3g01210 763 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 44 IPR025610 -
Vian3g01210 763 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 573 623 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01210 Vian-Chr3 13377967 13382005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01210 525 748 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 50.885 6.97e-67 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01210 - - vun:114190585 1231.47