Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01203 ATGGCAACAACAAGAAGATATGAGTTTGGAACGAATGAGAGTAGCCACCCAGACTCTATCAGAGCCACCATAGCTGAATTCATCTCCACTTGCATCTTTGTCTTTGTTGGAGAAGGCTCAGTCCTTGCTTTGACATCTGAGCTAGTGGTAATTGCAGTGGCTCATGCCTTTGCTCTATTTGCTGCTATTGCTGCAAGTGCACATGTTTCTGGTGGACACGTGAACCCTGCTGTCACTTTTGGTGCTCTTCTTGGTGGAAGGATCTCCGTTCTTAAAGCTATTTACTACTGGATTGCTCAAATCCTTGGTTCTATTGTTGCTGCTCTCTTGTTGAGACTTGTCACTAACAACATGAGACCAGAGGGATTCAGTTTATCAGTTGGGGTTGGAGCGGTTCATGGTCTTATACTTGAAATTGGCCTCACATTTGGTCTGATGTACACTGTGTATGCCACTGCTATGGATCCTAAAAGGGGTACAGTTAGCACAATTGCACCCTTAGCCATTGGACTGGTGGTAGGAGCAAACATCCTTGCTGGTGGACCTTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCATTGGTGGGCTGGAGGTGGCAGAACCACTGGATCTTCTGGGTGGGCCCATTACTTGGGGCAGCCCTAGCAGCAGTCCTGTATGAATTCGTTGTTATCCCAATTGAGCCTCCTCCTCATCAACCTTTGCCTGCTGAAGAGTACTAG 735 0.4776 MATTRRYEFGTNESSHPDSIRATIAEFISTCIFVFVGEGSVLALTSELVVIAVAHAFALFAAIAASAHVSGGHVNPAVTFGALLGGRISVLKAIYYWIAQILGSIVAALLLRLVTNNMRPEGFSLSVGVGAVHGLILEIGLTFGLMYTVYATAMDPKRGTVSTIAPLAIGLVVGANILAGGPFDGACMNPARAFGPALVGWRWQNHWIFWVGPLLGAALAAVLYEFVVIPIEPPPHQPLPAEEY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01203 244 NCBIfam MIP family channel protein 25 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01203 244 Gene3D Glycerol uptake facilitator protein. 9 232 IPR023271 -
Vian3g01203 244 Pfam Major intrinsic protein 14 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01203 244 PRINTS Major intrinsic protein family signature 170 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01203 244 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01203 244 PRINTS Major intrinsic protein family signature 137 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01203 244 PRINTS Major intrinsic protein family signature 55 79 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01203 244 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01203 244 PRINTS Major intrinsic protein family signature 207 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01203 244 PANTHER AQUAPORIN-8 12 232 IPR034294 -
Vian3g01203 244 SUPERFAMILY Aquaporin-like 14 236 IPR023271 -
Vian3g01203 244 CDD MIP 21 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01203 244 FunFam Probable aquaporin TIP1-1 5 243 - -
Vian3g01203 244 ProSitePatterns MIP family signature. 73 81 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01203 Vian-Chr3 13315519 13316756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01203 1 244 Major Intrinsic Protein MIP AT1G73190 62.687 1.35e-109 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01203 K09873 - gmx:100814469 344.354