Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01192 ATGGCAACTAGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCTGAAAACTTCTACAGTGCATTTGAGACTGAGTTAGCAGATGTTATCCCCGTGATCAAGACCTCCATTGGTGGCACCCGAATTGTTGGTCGTCTTTGTGTTGGAAACAAGAATGGCCTTCTCTTGCCCCATACCACCACAGACCAAGGTCTTCAACATTTGAGAAACAGCCTACCTGATCAAGTTGTTGTTCAGCGTATAGAAGAAAGATTATCCGCACTGGGAAATTGTATAGCATGTAATGATCATGTGGCTCTCACTCATACTGATCTAGACAAGGAAACTGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACTATTGCGGGCAATATTCTTGTGGGCAGTTACTGTGCATTCTCGAACAGGGGTGGTTTGGTCCACCCTCATACTTCCATTGAAGACTTGGATGAACTTTCAACCCTTCTTCAGGTTCCTTTGGTTGCTGGGACTGTGAATCGTGGTAGTGAAGTGATAGCTGCTGGCATGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACGGAGCTCTCTGTCATTGAGAGTGTTTTCAAGTTGAGAGAAGCTCAACCTAGTGCCATTGTCGATGAGATGAGGAAATCACTGGTTGATACTTATGTCTAA 738 0.4363 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFETELADVIPVIKTSIGGTRIVGRLCVGNKNGLLLPHTTTDQGLQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLVDTYV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01192 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Vian3g01192 245 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Vian3g01192 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Vian3g01192 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0042256|GO:0043022
Vian3g01192 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Vian3g01192 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Vian3g01192 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Vian3g01192 245 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Vian3g01192 245 SUPERFAMILY Pentein 1 224 - -
Vian3g01192 245 Gene3D - 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01192 Vian-Chr3 13173590 13179423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01192 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 91.429 1.21e-173 476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01235 8 31067618 31070142 Vian3g01192 3 13173590 13179423 PCT