Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01188 ATGAAATCGAAGGGTTTCCAGTGGAGCGATGCATTGGAGTTTGTGGATACACCTGGCGAGGGAATAGCGGTGAGAGCTTTGTGCCAATTGGAGGAAGGTGATGTTGTGGCCAAAATGCCAAAAGAAGCTTGCCTTACCACCAAGACTAGTGGGGCACGTGAGATCATTGAAGAGGCTGGTTTGGATGGTCATTTGGGGCTTGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGAGGACTCACCTTGGTATGGATACCTTCAACTCTTGCCTTACCAAGAATGCGTGCCAATTGTTTGGACCCTCAATGAAGTAAACGAGCTTTTGTGTGGTACCGAGCTTCACCAGACAGTGCAAGAAGACAAGGCTCTGATTTACGAGGACTGGAAAGAGAATATTCTCCCCCTATTGGATTCAGCACCTTTAAAGCTAAACCCGAAATTCTTTGAGATAGAACAATACTTTGCTGCGAAAAGTCTTATATCTTCTCGATCCTTTGAGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTATTCAATCATAAAACAGGTTCAGAGGATGTGCATTTCACTGCTATGCCCTCTAATTATGAATCAGGCAGTGATGTTGATGGTAGTAATAATGATGAGGGCATTGTTAAGGAAGAAGTAGCATTGGCTCAAAATTCCTCTACGGATATGACTGCGTCAATTGATGCTAATGTTGGGAACAACATTGATAGTGGTTTGGAGAGTTCTTCAGTTAGCGGAGATGATACTTCTATGTTGGAGATGATTACGATAAAAGATGTCAGTAGTGGAACTGAGGTATTTAATACTTATGGGCTATTGGGTAATGCTGCTTTGCTTCATAGATATGGATTTACCGAGAAAGACAATTCTTATGATATTGTAAACATAGACATGGAGCTGGTACTTCAATGGTGTTCTTCAGCTTTTTCTGATCGCCACAGTAGAGCGAGAGTTTCCCTTTGGAGAAGGTTAGGCTATTCTGCATGTGGCAGCCAAGACTCTGAATATTTTGAGATCTCATTTGACGGTGAACCACAAATTGAACTCCTCATTTTATTACACATCATGTTATTGCTAGATGATGCTTACCAAAAGTTAGACCTATCGGTATCAGTTGCTGGGAATTGTCCTGAATCAAATGGTGGAACTACCCATCTGAATGGTAATATCTTTCCTAACGAAGTATTTAATATGAGCAAGAAGTCCTTGCTGTCCAAAAGGGTTTGTGATGCCCTGTTGTCGCTAGCTGACATGAGGGAGAGTCTCTATGGTTTGAATTCAGTGGAAGATGATATTGAAGCATTGGAAAGGTGTAGTTTAGATAGAGAGAGGAAACTGTATCATTCTTTGGTGCTGCGCATCAATGAAAGGAAGATTCTTCAAAAGCTTAGAAATTATGCTTCGCAGCCATTTGAAATCAATAAGCATATTATTTGGTATTAA 1467 0.4124 MKSKGFQWSDALEFVDTPGEGIAVRALCQLEEGDVVAKMPKEACLTTKTSGAREIIEEAGLDGHLGLAFAIMYERSLGEDSPWYGYLQLLPYQECVPIVWTLNEVNELLCGTELHQTVQEDKALIYEDWKENILPLLDSAPLKLNPKFFEIEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGSEDVHFTAMPSNYESGSDVDGSNNDEGIVKEEVALAQNSSTDMTASIDANVGNNIDSGLESSSVSGDDTSMLEMITIKDVSSGTEVFNTYGLLGNAALLHRYGFTEKDNSYDIVNIDMELVLQWCSSAFSDRHSRARVSLWRRLGYSACGSQDSEYFEISFDGEPQIELLILLHIMLLLDDAYQKLDLSVSVAGNCPESNGGTTHLNGNIFPNEVFNMSKKSLLSKRVCDALLSLADMRESLYGLNSVEDDIEALERCSLDRERKLYHSLVLRINERKILQKLRNYASQPFEINKHIIWY 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01188 488 PIRSF RMS1_SET 1 478 IPR011383 GO:0016279|GO:0018026
Vian3g01188 488 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 448 - -
Vian3g01188 488 Pfam SET domain 21 279 IPR001214 GO:0005515
Vian3g01188 488 CDD SET_LSMT 11 293 - -
Vian3g01188 488 SUPERFAMILY SET domain 2 192 IPR046341 -
Vian3g01188 488 SUPERFAMILY SET domain 257 298 IPR046341 -
Vian3g01188 488 Gene3D - 295 482 IPR036464 -
Vian3g01188 488 Gene3D set domain protein methyltransferase, domain 1 1 292 - -
Vian3g01188 488 ProSiteProfiles SET domain profile. 10 279 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01188 1 474 NAC Transcription Factor Family AT3G56570 54.672 1.34e-178 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian3g01188 SET 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01188 - K05302 vra:106769924 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01188 3 13138979 13142212 Vian3g01188 3 13138979 13142212 ECH