Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01187 ATGGAGTCAAGCAATTTACATGCTGATCGAAGGGCAGATAGAAAGATAATAATAAGATACACGGAATGTCTGAAGAACCATGCAGCTTCAATTGGTGGCAATGCAACTGATGGTTGTGGCGAGTTCATTGCTGATGGAGAAGAAGGCACGCTTGAGGCTCTCAGATGCTCGGCTTGCAACTGCCACAGAAACTTCCACAGAAAAGAGATAGAGTCTTCTGATTCCTATATCACTCCTCTGATGATTATTCCTGACACTACTCAGATAGGGCCTATTTTGGCTCAGTTATCTCCCCACAAAAGTGGTTCAATTAGTCCTTCTGATGTGTCTGATGAGAAGGACTGTGAAAACGGGATGACAAAGGAGGTGGGAAATAATGCAACTGAAAAGGTGAAGAAGAGGTTTAGAACCAAGTTCACACAAGAACAAAAGGAGAAGATGTTTCTTTTTGCAGAAAGAGCAGGGTGGAGAATACAGAAGCTAGATGAATCTGTGTGTTTTCTTTGA 507 0.4241 MESSNLHADRRADRKIIIRYTECLKNHAASIGGNATDGCGEFIADGEEGTLEALRCSACNCHRNFHRKEIESSDSYITPLMIIPDTTQIGPILAQLSPHKSGSISPSDVSDEKDCENGMTKEVGNNATEKVKKRFRTKFTQEQKEKMFLFAERAGWRIQKLDESVCFL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01187 168 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Vian3g01187 168 SUPERFAMILY Homeodomain-like 126 165 IPR009057 -
Vian3g01187 168 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Vian3g01187 168 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 165 - -
Vian3g01187 168 Gene3D - 117 167 - -
Vian3g01187 168 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01187 Vian-Chr3 13135751 13136472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01187 11 166 ZF-HD Transcription Factor Family AT2G02540 44.505 5.96e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian3g01187 ZF-HD_dimer 4.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01187 - - gmx:100793926 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01187 3 13135751 13136472 Vian3g01187 3 13135751 13136472 ECH