Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01185 ATGATGGTTGTGAGCGGAGGGAAGGGCCTCAAACGCGCCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTTACGTTCCCTTCGCCGTCCCTCGCCGAGGCGGAGAACTTCGCCGGCGGTCCCTTTCGTTCTAACGTTCGCTCCTTTCTGACGAAGCACGCGCTGCTTCCGCCGCCGTACGCGCTGTTCCCCCACCTGCTGACGTGGCAGATACTCTTCCGCGTTGGCGAGCTTACCGAAGGCCCCGACTCGCCTGTTGTGTGCCTTGACGTCGTGGAAGAAGACGTCGCCAGATCCAGATCCGTTTACTGTGATCAGTGCCGTGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGTAAGCGGTACCATTTTATAATCAAAGCCGATGGAAGCTCTATTGGTGGGTACCACAAGCCGTGTATGTGTTGTGGAGACATCCTGCATTTGTCAGAATCCAAATGCAAGTCTTGCAATCACGTGACCACCACTGATGACGTTGAAGACTGGGTGTACCACCAATTAGAGAACACGACTCATCTTTTACACGGCGTAGTCCACGGCAATGGATATGGGCACCTTCTACGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGTCATATTATGGATTTCTGGGATCGCCTATGCAACACTCTTGGAGTTAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGCCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACACCCATGGTATGGTGACTGGGGTTATAGATTTGGCTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGTCTGCTGTTCAAAACCTATCCAACCTACCCTTGTCCAACTTTTCACAGGGACAGATGCCGGTACCCCATTCCCGTGTGCAGGACATGATAAAATATTTCCAGTCTTTGTCAGAGCATGATCTTGTAAATATAAGAGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCGCAAGAGTGTATCAAATGTTGATGACACAGCCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGAGAAGGCTGACATTGAACGTGTGGAGCAAGCTATGATCAGAGTGCTGCGTGCAGTGTCCGAGTCTAAGTGGGTAAACTGGCGTGCTCTTAGGGGTGCGGCCTGCAAGGTGGGCTCTCCAGAACTTCTTGATTATTGCCTGGGAGAACTGGGGGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTTGAGCCTGCCACTGGTGCTTGCTATGGAGTTTTAGCGAACAATAACTCTTCAGGCTCGAAGTATCCATCCGAAGAAAACCTCCTACAGTGCTTAAGATATTTATACGACTCTTTGCTTCATCCACAGATGATGGTAAACTATGTTGAAGCAGGGACGAGGACTCTCGCGATGAGCTCAGTTCAGAAGCTTTTTGACTGCAAGCAGTTTGTGAAAGATTATAGTCCCGAGTTGTTACCATTGTCAGATTTGCACAAATTACGCATCTCATGTCAGGTTGAAATCGTGGATGAATCTGAAGATCCAGAAGCCATAGCTCCAACGGAATTAATTGTGCTGCCCATGAACGCCACAGTGGCCGAGCTTAAAAGTCAAGCAGCGATTGCTTTTCAAGATGTATATCTAATGTTTAGAAGATTTCAAGTTGACGAGCTAGTAGGCTATAGCGGTGTTGAAGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTAGTTTGTGTTCGAGGAAGATGCATTGGGAAAAATGGGTTAAGTAAGTTCCGGATGGAACGTGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCCAAGGATGACGATGGGGAGAGAATGTTGGCGTGCGATATATGTGGAGTGTGGCGGCACACTAGGTGTTCTGACATCCATGATACTGATCCCGTTCCAGCACGATTTGTTTGCCTCAAATGCCAAAACAATGAATCAAAACTCAAATCTGGTGGCCACTGCAAAGATGAGACTGTCACTAACGTTACCACTCCCACTAGTTGTTTCGGAAAAACCTTCCCAGTGCCATCTGATGTCAGTTAG 2139 0.4806 MMVVSGGKGLKRAAKKRVTADFYDFLTFPSPSLAEAENFAGGPFRSNVRSFLTKHALLPPPYALFPHLLTWQILFRVGELTEGPDSPVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHGNGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCNTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYRFGSGSYCLTHEAYKSAVQNLSNLPLSNFSQGQMPVPHSRVQDMIKYFQSLSEHDLVNIRDLFCFIMGLIGDARKSVSNVDDTACKKRRFNASGLSISWEKADIERVEQAMIRVLRAVSESKWVNWRALRGAACKVGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRLEPATGACYGVLANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYVEAGTRTLAMSSVQKLFDCKQFVKDYSPELLPLSDLHKLRISCQVEIVDESEDPEAIAPTELIVLPMNATVAELKSQAAIAFQDVYLMFRRFQVDELVGYSGVEDSTQVKLLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQNNESKLKSGGHCKDETVTNVTTPTSCFGKTFPVPSDVS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01185 712 CDD PHD_MMD1_like 628 673 - -
Vian3g01185 712 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
Vian3g01185 712 SMART PHD_3 628 674 IPR001965 -
Vian3g01185 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 680 IPR013083 -
Vian3g01185 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 16 688 - -
Vian3g01185 712 Pfam PHD-finger 629 675 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01185 Vian-Chr3 13122581 13127120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01185 79 673 PHD Transcription Factor Family AT5G22260 30.709 1.84e-86 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian3g01185 PHD 1.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01185 K26271 - gmx:100818189 1332.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01185 3 13122581 13127120 Vian3g01185 3 13122581 13127120 ECH