Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01176 ATGGCGTTTTCAGTACTGCTACTGTTGTTCTCTCTTGCGTTTTTGCTCTCAAACCCAACATGGGTGTGTGGGAACGGAGAGCTAAGAGCACTGATGGATTTGAAAGCCAGTTTGGATCCAGAGAGCCTTTATCTACCGTCTTGGACTGTCAATGGTGACCCATGTGGTGGATATTTTGAAGGAGTAGCATGCAATGAGAAGGGTCAGGTGGCAAATATTTCTCTGCAGGGTAAGGGCCTCTCAGGGAAGCTTTCACCAGCCATTGCAGGGCTCAAGCACCTGACTGGACTCTACTTACATTATAACTCTCTGTATGGAGACATCCCTAGAGAGATTGCAAACTTGACTGAGCTTGTTGATTTGTATTTGAATGTAAACAATCTGTCTGGGGAAATCCCACGCGAGATAGCCACCATGGAGAACTTGCAAGTTTTGCAGCTTTGCTATAATCACTTGACTGGAAGCATTCCTACACAGCTAGGTGCTTTGAAAAAGCTGAGTGTTGTTGCATTGCAGTCAAACCAGTTAACTGGTGCTATCCCTGCTAGTCTAGGTGATTTGGGCATGCTGGCGAGGTTAGATTTGAGCTCTAATAATCTTTTTGGTTCCATTCCCACTAGTCTTGCTGAAGCTCCTTCACTGAGAGTTTTGGATGTTCACAACAACACCCTTTCTGGGAATGTACCTCCTGCTCTTAAGAGACTAGAGGATGGGTTTCTGTATAAGTACAATCTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCAACGCTTCGGATCATGTCATTCCAAGCAGACCAGAGCCTTATGGAGCAGCCACTAGAGATATCCCCGAAACTGCAAATGTGAAGTTACCATGCAATGGTACTCAGTGCCTTAATTCATCAAAATCAAATAAATCCATATCAATTACTGTTGTCATATTTGTGGTAATAATTGCAATGTCTGCAATTGGTATTTTGACATTCACACTGTATCGTCGGAGAAAGCAAAAGCTTGGAGGTTCTTTTCATATCAGTGACAACCGTCAAGGTACTGAGGAGGCCATGGGTGTGTGTAGGAAAAACGGATCTCCTTTGGTCAGCCTTGAGTACTCTACAGGATGGGACCCTTTGGCTGAGAGTAGAAATTTCAATGGGTATAGTCAAGATATGTTCCAGAGTTTGAGGTTCAATTTGGAAGAAGTGGAGTCTGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGCAAGAATAGCTTCAGTGCAACATATAGAGGAGTTTTGAGAGATGGATCCGTTGTTGCTGTGAAGAGCATAAGTAAAACTAGTTGCAAGTCGGATGAAGCTGAGTTTATGAAGGGACTGAACATGTTGACCTCATTGAGGAATGATAATGTAGTTAGGTTGAGAGGATTCTGTTGTTCAAGGGGACGAGGTGAATGCTTTCTGATTTATGATTTTGTTTCCAATGGAAACCTTTCACGCTTCCTTGATGTTAAGGAAGGAGATGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGGTTGCAAAAGGTATGGCATATTTACATGCATACAGAGCAAACAAACCAGTTTTGGTTCACCAAAACATCTCAGCTGACAGAGTCCTAATTGATCAGCGGTACAATCCATTGTTGGCAGATTCTGGCCTGTACAAGCTTCTTACTAATGATATTGTGTTCTCTGCACTGAAGGGTAGTGCAGCAAAGGGTTACCTGGCTCCTGAATATGCCACTACTGGGCGCCTTGCTCAGACAAGTGATGTCTATGCTTTTGGGGTGCTGCTTTTCCAGATCCTTTCTGGGAAGCAAGAAATCACTACCAGCTCAATAAGGCTTGCTGCAGAATGCTCCAACTTCCAAGAATTTATGGACCCAAATCTTCATGGAAGATACTTTGAATATGAAGCAGCTAAACTGGCTAAAATAGCTTTGCTTTGCTCCCATGAGTCTCCTTTCGAGAGGCCATCCATGGAAGCCATTGTTCAAGAACTGGGAAACTGCAGTAGCTGCCTCTGA 2037 0.4359 MAFSVLLLLFSLAFLLSNPTWVCGNGELRALMDLKASLDPESLYLPSWTVNGDPCGGYFEGVACNEKGQVANISLQGKGLSGKLSPAIAGLKHLTGLYLHYNSLYGDIPREIANLTELVDLYLNVNNLSGEIPREIATMENLQVLQLCYNHLTGSIPTQLGALKKLSVVALQSNQLTGAIPASLGDLGMLARLDLSSNNLFGSIPTSLAEAPSLRVLDVHNNTLSGNVPPALKRLEDGFLYKYNLGLCGVGFSSLKACNASDHVIPSRPEPYGAATRDIPETANVKLPCNGTQCLNSSKSNKSISITVVIFVVIIAMSAIGILTFTLYRRRKQKLGGSFHISDNRQGTEEAMGVCRKNGSPLVSLEYSTGWDPLAESRNFNGYSQDMFQSLRFNLEEVESATQYFSELNLLGKNSFSATYRGVLRDGSVVAVKSISKTSCKSDEAEFMKGLNMLTSLRNDNVVRLRGFCCSRGRGECFLIYDFVSNGNLSRFLDVKEGDGEVLEWSTRVSIVKGVAKGMAYLHAYRANKPVLVHQNISADRVLIDQRYNPLLADSGLYKLLTNDIVFSALKGSAAKGYLAPEYATTGRLAQTSDVYAFGVLLFQILSGKQEITTSSIRLAAECSNFQEFMDPNLHGRYFEYEAAKLAKIALLCSHESPFERPSMEAIVQELGNCSSCL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01176 678 Gene3D Transferase(Phosphotransferase) domain 1 484 677 - -
Vian3g01176 678 Gene3D Phosphorylase Kinase; domain 1 374 483 - -
Vian3g01176 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 145 672 IPR046959 -
Vian3g01176 678 Pfam Protein tyrosine and serine/threonine kinase 409 671 IPR001245 GO:0004672|GO:0006468
Vian3g01176 678 FunFam Leucine-rich repeat receptor-like kinase 26 135 - -
Vian3g01176 678 ProSiteProfiles Protein kinase domain profile. 405 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01176 678 FunFam Protein NSP-INTERACTING KINASE 2 484 675 - -
Vian3g01176 678 Gene3D Ribonuclease Inhibitor 21 298 IPR032675 -
Vian3g01176 678 SUPERFAMILY Protein kinase-like (PK-like) 380 671 IPR011009 -
Vian3g01176 678 FunFam Protein NSP-INTERACTING KINASE 2 376 483 - -
Vian3g01176 678 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Vian3g01176 678 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vian3g01176 678 SUPERFAMILY L domain-like 23 234 - -
Vian3g01176 678 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01176 Vian-Chr3 13052345 13055085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01176 8 518 Miscellaneous Gene Families AT4G22730 55.619 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vian3g01176 PK_Tyr_Ser-Thr 6.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01176 - - gmx:100775422 1216.83