Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01171 ATGGAGGGAAGAGAGAGTTTTGGTGTTGTGGTGGGTGATGAAGCCCCCGAGAGCTTCCATGTTGCTCCTAGAATAATTGAGAACAACTTGGACTTTTCAAGGGCCATCGTGCCTGCGCCGTCGACGGAGGGTAAAAAGAAGAGAGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGGTGGCTGTGGGGGCGGTGACGGCGCTTTCGCCGATGCCGATTTCATCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGGGGTAGAGGAAGGCCTGTTGAATCTATCAAAAAGTCATCGTTCAAGTTTGAGGTTGAAAGCCCTGTTCAAGGTGATGGAATATCATACTCCGTTGGTGCCAATTTCACACCACATGTTCTCACAGTAAATTCTGGCGAGGATGTCACTATGAAAATCATGTCCTTCTCACAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGGGGTACTTTAACATATGAGGGACGGTTTGAAATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGCATGAGTGTCTCTTTGGCCGGTCCAGATGGTAGAGTAATGGGGGGTGGGCTTGCTGGTTTGCTGGTAGCCGCTGGTCCAGTTCAGGTTGTTGTTGGCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAAACAAGAAGCAAAGGGTGGAGCATATATCAACTATTACCCCTTCTCCTGTTAATATCATCTCTAGTGAGGAACTAAAAGTCAGTTTCGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGTTTCTTTTAACAATGGTCAAGACTCTAGGAACGCAGCTCCTGATGATAGAGATCCTTTACCCGACAAGGAGTCTAATATAAGCCAATCAAACGCTGAGGCTGCATGCTAA 990 0.4717 MEGRESFGVVVGDEAPESFHVAPRIIENNLDFSRAIVPAPSTEGKKKRGRPRKYGPDGKVAVGAVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPVQGDGISYSVGANFTPHVLTVNSGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKNKKQRVEHISTITPSPVNIISSEELKVSFGGVKPIMTPAAFQEENIVSFNNGQDSRNAAPDDRDPLPDKESNISQSNAEAAC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01171 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 291 IPR039605 GO:0003680
Vian3g01171 329 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 242 - -
Vian3g01171 329 ProSiteProfiles PPC domain profile profile. 120 262 IPR005175 -
Vian3g01171 329 FunFam AT-hook motif nuclear-localized protein 1-like 125 256 - -
Vian3g01171 329 MobiDBLite consensus disorder prediction 37 56 - -
Vian3g01171 329 Gene3D - 125 258 - -
Vian3g01171 329 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Vian3g01171 329 SMART AT_hook_2 45 57 IPR017956 GO:0003677
Vian3g01171 329 MobiDBLite consensus disorder prediction 297 329 - -
Vian3g01171 329 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 238 IPR005175 -
Vian3g01171 329 CDD DUF296 124 238 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01171 Vian-Chr3 12990650 12996749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01171 45 313 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 57.801 2.61e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01171 - - gmx:100776862 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01189 8 30521729 30526983 Vian3g01171 3 12990650 12996749 ECH
Vian3g01171 3 12990650 12996749 Vian3g01171 3 12990650 12996749 ECH
Vian8g01189 8 30521729 30526983 Vian3g01171 3 12990650 12996749 PCT