Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01159 ATGTATTCTCTTTCCCCCGCGGTGAAAGCGAAACATCCCAAACCCATACCAAAACTTCTATATAAACCCAATTTTTTGCCCATACACCTTGTCCGTGGGTTACAACACTCTTCCGTTGTTCAACGCACAACCATGGAACCGCCATTGCAACACCAACCATCACCGCCACCGTCACCACGCTCCCTCACCATCCTTGGGAAATACCAGCTGACTCGCCTCCTCGGGCGTGGAAGCTTCGCCAAGGTCTATCAGGCACGATCCCTAATTGACGGCGCCACCTTCGCCGTCAAAATTATTGACAAATCCAAAACCGTCGATGCTGGCATGGAGCCCCGCATAATCCGCGAGATTGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTTAAAATCCACGAGGTTATGGCCACAAAGACCAAAATCCACCTCATCGTGGAGCTTGCCGCCGGAGGCGAGCTCTTCGCTAGAATCTCCCGTCGCGGCCGTTTGCCGGAGTCCACAGCGCGCCGATACTTCCAGCAGCTGGTCTCCGCGCTCCGGTTCTGCCACCGCAACGGTGTGGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGGCGAAGGAAACCTCAAAGTCTCCGACTTCGGCCTCTCCGCTCTGCCGGAGCATCTCAAGAACGGCCTTCTCCACACCGCATGCGGTACGCCAGCGTACACAGCGCCCGAGATACTCCGCCAGAACGGCGGCTACGACGGGTCCAAGGCCGACGCCTGGTCCTGCGGCCTCATTCTCTACGTCTTCCTCGCCGGCTACCTTCCGTTCGACGACACGAACATTCCGGCGATGTACAAGAAGATTTCCCGGAGAGATTACCAGTTCCCTGACTGGATATCAAAACCGGCACGCTATGTTATATATAAATTACTGGACCCGAACCCAGAAACAAGAATGGGTTTGGAGGCTCTGTTTGGGAACCCGTGGTTCAAGAAATCATTGAAACCGGAAACGGCGGAGGAAAGCGCGTTTGGGTGGGATAACGTTTATGTGAAGGGTTGTTATTACGAAGGGGTTAAGTGTTCGGGTGTGAACGCTTTTGATATAATATCGATGTCTTCGGGGTTGAATTTAACAAGGCTGTTCGAAACGACGTCGGATGGGGGTAGTAGGAGGGAGAAGAGATTCACTTCGAGTGCTCGCGTGGAGGTGGTGGAGGAGAAGCTTAAGGAAGTGGGTGGGATTTTGGGGTTTAAGGTTGAGGCTGGGAAAGCCATTAACGGTGCAATTGCATTGTTGAAAGGAAAGGTGGCTTTAGTGTTCGAGGTGCTTCAGATTGTACCGGATCAGCTTCTTCTGGTGGCCGTGAAGGTCGTGGAGGGTGCGTTAGAGTTTGAGGAGCATCACTGGGGTGATTGGAAAAATGCCTTGCAAGATCTCGTCCTCTCTTGGCACAACGATGAATCATGA 1452 0.5393 MYSLSPAVKAKHPKPIPKLLYKPNFLPIHLVRGLQHSSVVQRTTMEPPLQHQPSPPPSPRSLTILGKYQLTRLLGRGSFAKVYQARSLIDGATFAVKIIDKSKTVDAGMEPRIIREIDAMRRLHHHPNILKIHEVMATKTKIHLIVELAAGGELFARISRRGRLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDGEGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEILRQNGGYDGSKADAWSCGLILYVFLAGYLPFDDTNIPAMYKKISRRDYQFPDWISKPARYVIYKLLDPNPETRMGLEALFGNPWFKKSLKPETAEESAFGWDNVYVKGCYYEGVKCSGVNAFDIISMSSGLNLTRLFETTSDGGSRREKRFTSSARVEVVEEKLKEVGGILGFKVEAGKAINGAIALLKGKVALVFEVLQIVPDQLLLVAVKVVEGALEFEEHHWGDWKNALQDLVLSWHNDES 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01159 483 ProSiteProfiles NAF domain profile. 353 377 IPR018451 GO:0007165
Vian3g01159 483 SMART serkin_6 68 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01159 483 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 63 423 - -
Vian3g01159 483 Pfam NAF domain 358 415 IPR004041 GO:0007165
Vian3g01159 483 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Vian3g01159 483 Gene3D Transferase(Phosphotransferase) domain 1 60 349 - -
Vian3g01159 483 ProSiteProfiles Protein kinase domain profile. 68 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01159 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vian3g01159 483 Gene3D Kinase associated domain 1, KA1 354 476 - -
Vian3g01159 483 CDD CIPK_C 359 472 - -
Vian3g01159 483 SUPERFAMILY Protein kinase-like (PK-like) 64 331 IPR011009 -
Vian3g01159 483 FunFam Non-specific serine/threonine protein kinase 59 346 - -
Vian3g01159 483 FunFam Non-specific serine/threonine protein kinase 61 153 - -
Vian3g01159 483 Pfam Protein kinase domain 68 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01159 Vian-Chr3 12825515 12826966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01159 45 480 CBL-interacting serine-threonine protein kinases AT4G14580 58.770 5.41e-171 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian3g01159 Pkinase 7.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01159 K12761 - gmx:100784173 736.487