Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01155 ATGGAAAGCACTGTCACGTACGAGACTGATCTCAACCTCAAGGCAACTGAGCTTAGATTGGGGCTCCCAGGAACAGAAGAAACTCAGGAAAAAACACTGCCTCCGTCTGCTAGAATTACCAACAAAAGGCCATTGACTGAAACTTCTGAGGAGACTGTTTCTAATGCTCAAAAAAATGTGGAAGCTGAGGCAGCCCCTCCAGCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAGCCTTCACGAGAACGAGGGTGCTGGGATTTATGTGAAAGTAAGCATGGATGGAGCTCCTTACCTAAGGAAGATTGACCTGAAGGTGTATGGAGGCTACACACAACTTCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAAGAAGGTTACAAGGGATCTGACTATGCACCAACTTATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTGAGGATCATGAAAGGATCAGAGGCTCGGGGTTTGGGTTGTGGTGTATGA 573 0.4607 MESTVTYETDLNLKATELRLGLPGTEETQEKTLPPSARITNKRPLTETSEETVSNAQKNVEAEAAPPAKAKIVGWPPIRSYRKNSLHENEGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01155 190 ProSiteProfiles PB1 domain profile. 93 180 IPR000270 GO:0005515
Vian3g01155 190 Gene3D - 87 190 - -
Vian3g01155 190 MobiDBLite consensus disorder prediction 29 59 - -
Vian3g01155 190 Pfam AUX/IAA family 38 187 IPR033389 -
Vian3g01155 190 FunFam Auxin-responsive protein 88 190 - -
Vian3g01155 190 SUPERFAMILY CAD & PB1 domains 83 179 - -
Vian3g01155 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 184 IPR003311 GO:0005634|GO:0006355
Vian3g01155 190 MobiDBLite consensus disorder prediction 18 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01155 Vian-Chr3 12757303 12758145 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01155 96 186 B3 DNA Binding Superfamily AT2G46530 37.363 6.27e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian3g01155 AUX_IAA 9.7e-53 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01155 3 12757303 12758145 Vian3g01155 3 12757303 12758145 ECH