Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01153 ATGGCAACTATGCTGGCAAAGGACCATGCTCTCAACCTCAAGGAGACTGAGCTTTGCCTCGGTCTGCCTGGTGCTGGCGGTGGAGGCGGCGGCGGCGGCGGTGGCTCTGAGGTGGAAACACCAAGGGCTACTGGGAAGAGAGGATTCTCTGAGACAGTTGATCTGAAGCTCAATCTGCAGGCCAAGGAAGATCTCAACGACAATCTGAAGAATGCCTCAGAGGAGAAGACCCTCCTTAAGGATCCTACCAAACAACCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGAAAGAACATGATGAGCCAGAAGGTTAGCACCGAGGATGGAGCTGAGAAGACAACAAGCAGCACTGCTTCTGGGGCATTTGTCAAAGTTTCCATGGACGGAGCTCCTTATCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCGAAAATGTTCAGCTCCTTCACCATGGGTAATTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGCGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAGGCAATTGGACTTGAGCAATGGAAAAATGCAAAAGCAGAAGCTGAAAGTGGGGAAATACATGATGTGTGA 750 0.4933 MATMLAKDHALNLKETELCLGLPGAGGGGGGGGGGSEVETPRATGKRGFSETVDLKLNLQAKEDLNDNLKNASEEKTLLKDPTKQPAKAQVVGWPPVRSYRKNMMSQKVSTEDGAEKTTSSTASGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNERKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLEQWKNAKAEAESGEIHDV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01153 249 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
Vian3g01153 249 Coils Coil 55 75 - -
Vian3g01153 249 Gene3D - 120 237 - -
Vian3g01153 249 SUPERFAMILY CAD & PB1 domains 122 224 - -
Vian3g01153 249 Pfam AUX/IAA family 43 231 IPR033389 -
Vian3g01153 249 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 230 IPR003311 GO:0005634|GO:0006355
Vian3g01153 249 FunFam Auxin-responsive protein 120 235 - -
Vian3g01153 249 MobiDBLite consensus disorder prediction 25 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01153 Vian-Chr3 12715634 12717669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01153 123 228 B3 DNA Binding Superfamily AT3G61830 33.962 6.96e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian3g01153 AUX_IAA 2e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01153 K14484 - gmx:100810762 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01153 3 12715634 12717669 Vian3g01153 3 12715634 12717669 ECH