Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01145 ATGGTCCGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGGCTCCCGAGGAAGATCAAATCCTCACTTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAACAAGCAGGCCTGTTAAGATGTGGAAAAAGTTGCAGACTGCGATGGATTAACTATTTGAAGCCTGATATCAAGAGAGGGAATTTCACATCTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGCTGGGTAACAGGTGGTCGGCAATTGCAGCAAAATTGCCCGGAAGAACTGACAACGAAATAAAAAATGTGTGGCACACCAATTTGAAGAAGAGGTTGCTGAATTCAAATTCCAGAAGAGTCACAAAGCCAAAAATCAAACGTTCTGATTCCAATTCCAGCATCATAACTGAATCAGAAGCTGCCAATTTTAATTTCAGAGAAATGGATTCAACATCTGCCTGCACCACTTCTAGTGATTTTTCATCGGTCACAGTTGGTGAAAGCAAAAATATCAAGTGTGAAGACATAGAGTCTCTAGAGACAATGCCCGTGATTGACGAGAGTTTTTGGTCAGAACCTGCAATTGATGAAGCACCCTCCATGTCATCACAATCCATGACAATCTCAAATCAGATGCCATTTCAATACCCTTTTACTAACTATGAGGAAACTTTCCCGCAGAGTCATGCTTATGATTCAAACTTTGATGACGGCATGGATTTCTGGTATGACATATTCACCAGGACTGCCGATTCCACAGAATTGCCAGAGTTCTGA 789 0.4221 MVRAPCCEKMGLKKGPWAPEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLKPDIKRGNFTSEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLNSNSRRVTKPKIKRSDSNSSIITESEAANFNFREMDSTSACTTSSDFSSVTVGESKNIKCEDIESLETMPVIDESFWSEPAIDEAPSMSSQSMTISNQMPFQYPFTNYEETFPQSHAYDSNFDDGMDFWYDIFTRTADSTELPEF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01145 262 CDD SANT 69 112 IPR001005 -
Vian3g01145 262 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian3g01145 262 FunFam Myb transcription factor 11 67 - -
Vian3g01145 262 CDD SANT 16 61 IPR001005 -
Vian3g01145 262 SMART sant 66 114 IPR001005 -
Vian3g01145 262 SMART sant 13 63 IPR001005 -
Vian3g01145 262 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian3g01145 262 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vian3g01145 262 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian3g01145 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 203 - -
Vian3g01145 262 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vian3g01145 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian3g01145 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian3g01145 262 Gene3D - 69 140 - -
Vian3g01145 262 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01145 Vian-Chr3 12608022 12609750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01145 1 262 MYB Transcription Factor Family AT2G31180 50.000 8.14e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g01145 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01145 K09422 - gmx:100807569 460.685